Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   OIY87_RS07080 Genome accession   NZ_CP113954
Coordinates   1402993..1404222 (-) Length   409 a.a.
NCBI ID   WP_012962047.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1397993..1409222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS07055 (OIY87_08370) - 1398287..1398934 (+) 648 WP_013643160.1 endonuclease III domain-containing protein -
  OIY87_RS07060 (OIY87_08375) - 1399043..1399711 (+) 669 WP_039694591.1 YoaK family protein -
  OIY87_RS07065 (OIY87_08380) mmuM 1399751..1400701 (-) 951 WP_013643161.1 homocysteine S-methyltransferase -
  OIY87_RS07070 (OIY87_08385) - 1400714..1402090 (-) 1377 WP_269724842.1 amino acid permease -
  OIY87_RS07075 (OIY87_08390) yihA 1402389..1402982 (-) 594 WP_012962046.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  OIY87_RS07080 (OIY87_08395) clpX 1402993..1404222 (-) 1230 WP_012962047.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OIY87_RS07085 (OIY87_08400) - 1404255..1404425 (-) 171 WP_003065196.1 hypothetical protein -
  OIY87_RS07090 (OIY87_08405) - 1404442..1404936 (-) 495 WP_013643163.1 dihydrofolate reductase -
  OIY87_RS07095 (OIY87_08410) - 1405024..1405863 (-) 840 WP_013643164.1 thymidylate synthase -
  OIY87_RS07100 (OIY87_08415) - 1406185..1407363 (+) 1179 WP_013643165.1 hydroxymethylglutaryl-CoA synthase -
  OIY87_RS07105 (OIY87_08420) - 1407338..1408621 (+) 1284 WP_269724843.1 hydroxymethylglutaryl-CoA reductase, degradative -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45154.77 Da        Isoelectric Point: 4.5644

>NTDB_id=763830 OIY87_RS07080 WP_012962047.1 1402993..1404222(-) (clpX) [Streptococcus gallolyticus strain XH2168]
MVGNRTNDVKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLAEVPKPKELLATLDEYVVGQDR
AKRALAVAVYNHYKRVSFAESRNEEDVDLQKSNILMIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNNRKIDENASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLTADDLVRI
LTEPRNALVKQYQTLLSYDGVELEFDKDALQAIANKAIERKTGARGLRSIIEETMMDIMFEIPSQEEVTKVRITKAAVEG
KDKPILEIA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=763830 OIY87_RS07080 WP_012962047.1 1402993..1404222(-) (clpX) [Streptococcus gallolyticus strain XH2168]
ATGGTTGGAAATCGAACAAATGATGTAAAAGTTTATTGCTCATTCTGTGGAAAAAGCCAAGATGAAGTGAAAAAAATCAT
TGCAGGAAACAATGTTTTTATCTGTAATGAGTGCGTGGCTTTGTCACAAGAAATTATCAAAGAAGAACTTGCTGAAGAAG
TTCTTGCAGATTTAGCGGAAGTTCCAAAACCTAAAGAGTTGTTAGCAACTCTTGACGAATATGTCGTTGGTCAAGACCGT
GCCAAACGCGCGCTTGCCGTAGCTGTTTATAACCATTACAAACGTGTTTCTTTTGCGGAAAGTCGCAACGAAGAAGATGT
TGATTTGCAAAAATCAAATATTTTGATGATTGGTCCTACAGGTTCAGGAAAAACATTCCTAGCTCAAACTTTGGCTAAAA
CATTGAATGTACCGTTTGCGATTGCTGATGCGACATCATTGACAGAAGCAGGATACGTTGGTGAAGATGTTGAAAATATC
CTCTTGAAATTAATTCAAGCAGCTGATTTTAATATCGAACGCGCCGAACGCGGTATTATTTACGTGGATGAAATTGATAA
AATCGCTAAAAAAGGTGAAAATGTCTCAATTACACGTGATGTTTCAGGTGAAGGTGTTCAACAAGCACTTCTTAAAATCA
TTGAAGGAACAGTTGCTAGCGTACCACCTCAAGGTGGACGTAAGCACCCTAACCAAGAAATGATTCAAATTGATACTAAA
AATATCTTATTCATTGTCGGCGGTGCTTTTGATGGTATCGAAGATATTGTCAAACAACGTTTAGGTGAAAAGGTTATCGG
TTTTGGTCAAAATAACCGTAAAATTGATGAAAATGCTTCTTATATGCAAGAAATCATTTCAGAAGACATTCAAAAATTTG
GCTTGATTCCAGAGTTTATCGGACGTTTGCCAGTTGTAGCGGCACTTGAACAGTTGACGGCTGATGATTTGGTTCGTATC
TTGACAGAACCACGTAATGCCTTGGTTAAACAATATCAAACGCTATTATCATACGACGGTGTTGAACTAGAATTTGATAA
AGATGCTTTGCAAGCTATTGCTAACAAAGCCATTGAACGTAAGACAGGAGCTCGTGGTTTACGCTCAATTATTGAAGAAA
CTATGATGGATATCATGTTTGAAATTCCTAGCCAAGAAGAAGTGACTAAGGTTCGTATCACTAAAGCAGCTGTTGAAGGC
AAAGACAAACCAATTTTGGAAATTGCGTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-391)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.976

100

0.9
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.603

98.044

0.575