Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   OIY87_RS01770 Genome accession   NZ_CP113954
Coordinates   319237..320283 (+) Length   348 a.a.
NCBI ID   WP_009853406.1    Uniprot ID   A0A060RH60
Organism   Streptococcus gallolyticus strain XH2168     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 314237..325283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS01755 (OIY87_03050) - 315503..317158 (+) 1656 WP_074582294.1 peptide ABC transporter substrate-binding protein -
  OIY87_RS01760 (OIY87_03055) - 317269..318183 (+) 915 WP_009853404.1 ABC transporter permease -
  OIY87_RS01765 (OIY87_03060) - 318194..319225 (+) 1032 WP_269725117.1 ABC transporter permease -
  OIY87_RS01770 (OIY87_03065) oppD 319237..320283 (+) 1047 WP_009853406.1 ABC transporter ATP-binding protein Regulator
  OIY87_RS01775 (OIY87_03070) amiF 320283..321212 (+) 930 WP_253042287.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38637.24 Da        Isoelectric Point: 4.8139

>NTDB_id=763809 OIY87_RS01770 WP_009853406.1 319237..320283(+) (oppD) [Streptococcus gallolyticus strain XH2168]
MTEETILQVKNLRVDFHTYAGEIKAIRDVSFDLKEGETLAIVGESGSGKSVTTKTLMGLSASNAEVTGDIDFKGKKLTEL
KEDEWIKVRGNEIAMIFQDPMTSLDPTMKIGQQIAEPIMIHEKVSKQEALKRALELMKNVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPDILIADEPTTALDVTIQAQILNLMKQIQKERGSSIVFITHDLGVVAGMADRVAVMYAGKIIEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAPRNEFALDIDYEEEPPMFKVSDTHFAATWLL
DERAPKVTPPLPIQKRWAKWKELEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=763809 OIY87_RS01770 WP_009853406.1 319237..320283(+) (oppD) [Streptococcus gallolyticus strain XH2168]
ATGACTGAAGAAACAATTTTACAAGTTAAAAACCTCCGTGTAGATTTCCATACCTATGCTGGGGAAATTAAAGCTATTCG
TGATGTCAGCTTTGACTTAAAAGAAGGTGAAACGCTTGCCATTGTTGGTGAGTCAGGTTCAGGTAAATCTGTAACAACAA
AAACGTTGATGGGCTTGTCAGCTTCAAATGCAGAAGTTACAGGAGACATCGATTTCAAAGGTAAAAAATTAACAGAATTA
AAAGAAGACGAATGGATTAAGGTTCGTGGAAATGAAATTGCAATGATTTTCCAAGACCCTATGACAAGTCTTGACCCAAC
AATGAAAATTGGTCAACAAATTGCTGAACCAATTATGATTCATGAAAAAGTTTCTAAACAAGAAGCTTTAAAACGTGCTT
TGGAACTCATGAAAAATGTCGGTATTCCAAACGCAGAAGAACATATTAATGATTATCCGCACCAATGGTCAGGTGGTATG
CGTCAACGTGCTGTTATTGCGATTGCCTTGGCAGCAAACCCAGATATTTTGATTGCTGATGAACCTACAACAGCCTTGGA
CGTAACCATTCAAGCACAAATTTTGAATTTGATGAAACAAATTCAAAAAGAACGTGGTTCATCAATCGTCTTTATCACAC
ATGACCTTGGTGTTGTTGCGGGTATGGCTGATCGTGTTGCCGTTATGTATGCTGGTAAGATTATTGAATATGGAACAGTA
GATGAAGTATTCTATAACCCACAACATCCATATACTTGGGGGCTTTTGAATTCAATGCCAACAACTGATACTGAAGCAGG
AAGCCTTCAATCTATCCCAGGGACACCGCCAGATCTCCTTAACCCACCAAAAGGTGATGCTTTTGCACCACGTAACGAGT
TTGCTTTAGATATTGATTACGAAGAAGAACCACCAATGTTTAAAGTTAGTGATACGCATTTTGCAGCTACATGGTTGTTA
GATGAACGTGCACCTAAAGTAACACCACCATTGCCAATTCAAAAACGTTGGGCAAAATGGAAAGAACTTGAAGGGAGAAA
AGCTTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060RH60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

80.403

99.713

0.802
  amiE Streptococcus salivarius strain HSISS4

59.172

97.126

0.575
  amiE Streptococcus thermophilus LMG 18311

58.876

97.126

0.572
  amiE Streptococcus thermophilus LMD-9

58.876

97.126

0.572