Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   OIY87_RS01775 Genome accession   NZ_CP113954
Coordinates   320283..321212 (+) Length   309 a.a.
NCBI ID   WP_253042287.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 315283..326212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS01755 (OIY87_03050) - 315503..317158 (+) 1656 WP_074582294.1 peptide ABC transporter substrate-binding protein -
  OIY87_RS01760 (OIY87_03055) - 317269..318183 (+) 915 WP_009853404.1 ABC transporter permease -
  OIY87_RS01765 (OIY87_03060) - 318194..319225 (+) 1032 WP_269725117.1 ABC transporter permease -
  OIY87_RS01770 (OIY87_03065) oppD 319237..320283 (+) 1047 WP_009853406.1 ABC transporter ATP-binding protein Regulator
  OIY87_RS01775 (OIY87_03070) amiF 320283..321212 (+) 930 WP_253042287.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 34949.72 Da        Isoelectric Point: 5.6140

>NTDB_id=763810 OIY87_RS01775 WP_253042287.1 320283..321212(+) (amiF) [Streptococcus gallolyticus strain XH2168]
MTENRKKLVELKNVSLTFNEGKKNEVKAIDNISFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINKGEIDFDGETISHL
KGKELHEFRKNAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVNSKEERDQKVQDLLALVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLTAIPEPDPESERNRVHEEYDPSAELDGQPREMREITPGHFVLCTEAEAEAYKQGL

Nucleotide


Download         Length: 930 bp        

>NTDB_id=763810 OIY87_RS01775 WP_253042287.1 320283..321212(+) (amiF) [Streptococcus gallolyticus strain XH2168]
ATGACTGAAAATAGAAAAAAGCTTGTTGAACTTAAAAATGTATCATTGACTTTTAACGAAGGTAAAAAGAACGAAGTAAA
AGCTATTGATAATATCAGTTTTGATATTTACGAAGGTGAAGTTTTCGGTCTTGTTGGAGAATCAGGTTCTGGTAAGACAA
CCGTTGGTCGTGCTATTTTGAAATTGTACGACATTAATAAAGGTGAAATTGATTTTGATGGCGAAACTATCTCTCACCTT
AAAGGGAAAGAATTGCACGAATTCCGTAAAAATGCTCAAATGATTTTCCAAGACCCACAAGCTAGTCTTAATGGTCGTAT
GAAAATTCGTGACATCGTTGCGGAAGGACTTGACATCCATAAATTAGTTAACAGTAAAGAAGAACGTGACCAAAAAGTTC
AAGATTTACTTGCTTTAGTCGGGCTTAATAAAGACCATTTGACACGCTACCCACATGAATTTTCAGGTGGACAACGTCAA
CGTATTGGTATCGCCCGTGCTCTTGCTGTTGAACCAAAATTCATCATTGCCGATGAACCAATTTCAGCCCTTGACGTGTC
AATCCAAGCTCAAGTTGTTAATCTTATGCAAAAACTTCAAAGAGAACAAGGTTTAACATATCTCTTTATCGCTCACGATT
TGTCAATGGTTAAATACATCTCAGATCGTATTGGGGTTATGCACTGGGGTAAAATGCTTGAAATCGGAACGTCTGATGAT
GTTTATAATCATCCAATTCACCCATATACTAAGAGCTTGTTGACTGCAATTCCAGAACCAGACCCAGAATCTGAAAGAAA
TCGTGTTCACGAAGAATACGATCCAAGTGCAGAACTAGATGGCCAACCACGTGAAATGCGTGAAATTACACCAGGACACT
TTGTTCTTTGTACAGAAGCAGAAGCAGAAGCTTATAAACAAGGATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(30-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.934

98.382

0.54
  amiF Streptococcus salivarius strain HSISS4

54.934

98.382

0.54
  amiF Streptococcus thermophilus LMG 18311

54.605

98.382

0.537