Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMZ13_RS03425 Genome accession   NZ_CP125741
Coordinates   627902..628450 (+) Length   182 a.a.
NCBI ID   WP_002869474.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2212     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 622902..633450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ13_RS03390 (QMZ13_03385) - 623093..623518 (+) 426 WP_002869469.1 GNAT family N-acetyltransferase -
  QMZ13_RS03395 (QMZ13_03390) - 623582..624201 (+) 620 Protein_649 NAD(P)H-dependent oxidoreductase -
  QMZ13_RS03400 (QMZ13_03395) - 624201..624806 (+) 606 WP_002869471.1 NAD(P)H-dependent oxidoreductase -
  QMZ13_RS03405 (QMZ13_03400) pgsA 624931..625467 (+) 537 WP_002869472.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QMZ13_RS03410 (QMZ13_03405) rseP 625464..626570 (+) 1107 WP_002869473.1 RIP metalloprotease RseP -
  QMZ13_RS03415 (QMZ13_03410) - 626563..627429 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  QMZ13_RS03420 (QMZ13_03415) rpsF 627516..627893 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  QMZ13_RS03425 (QMZ13_03420) ssb 627902..628450 (+) 549 WP_002869474.1 single-stranded DNA-binding protein Machinery gene
  QMZ13_RS03430 (QMZ13_03425) rpsR 628461..628721 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  QMZ13_RS03435 (QMZ13_03430) lon 628781..631156 (-) 2376 WP_410497339.1 endopeptidase La -
  QMZ13_RS03440 (QMZ13_03435) - 631173..631820 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  QMZ13_RS03445 (QMZ13_03440) fliW 631981..632370 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  QMZ13_RS03450 (QMZ13_03445) proC 632370..633101 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  QMZ13_RS03455 (QMZ13_03450) ctsT 633098..633400 (+) 303 WP_002875928.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20569.47 Da        Isoelectric Point: 5.0431

>NTDB_id=763780 QMZ13_RS03425 WP_002869474.1 627902..628450(+) (ssb) [Campylobacter jejuni strain MS2212]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=763780 QMZ13_RS03425 WP_002869474.1 627902..628450(+) (ssb) [Campylobacter jejuni strain MS2212]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.068

96.703

0.368
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363