Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMZ12_RS08805 Genome accession   NZ_CP125738
Coordinates   1651900..1652448 (-) Length   182 a.a.
NCBI ID   WP_002869474.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2217     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1646900..1657448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ12_RS08775 (QMZ12_08770) ctsT 1646950..1647252 (-) 303 WP_002875928.1 hypothetical protein Machinery gene
  QMZ12_RS08780 (QMZ12_08775) proC 1647249..1647980 (-) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  QMZ12_RS08785 (QMZ12_08780) fliW 1647980..1648369 (-) 390 WP_002852982.1 flagellar assembly protein FliW -
  QMZ12_RS08790 (QMZ12_08785) - 1648530..1649177 (+) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  QMZ12_RS08795 (QMZ12_08790) lon 1649194..1651569 (+) 2376 WP_002852988.1 endopeptidase La -
  QMZ12_RS08800 (QMZ12_08795) rpsR 1651629..1651889 (-) 261 WP_002853032.1 30S ribosomal protein S18 -
  QMZ12_RS08805 (QMZ12_08800) ssb 1651900..1652448 (-) 549 WP_002869474.1 single-stranded DNA-binding protein Machinery gene
  QMZ12_RS08810 (QMZ12_08805) rpsF 1652457..1652834 (-) 378 WP_002853062.1 30S ribosomal protein S6 -
  QMZ12_RS08815 (QMZ12_08810) - 1652921..1653787 (-) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  QMZ12_RS08820 (QMZ12_08815) rseP 1653780..1654886 (-) 1107 WP_002869473.1 RIP metalloprotease RseP -
  QMZ12_RS08825 (QMZ12_08820) pgsA 1654883..1655419 (-) 537 WP_002869472.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QMZ12_RS08830 (QMZ12_08825) rdxA 1655544..1656149 (-) 606 WP_002869471.1 NAD(P)H-dependent oxidoreductase -
  QMZ12_RS08835 (QMZ12_08830) - 1656149..1656768 (-) 620 Protein_1711 NAD(P)H-dependent oxidoreductase -
  QMZ12_RS08840 (QMZ12_08835) - 1656832..1657257 (-) 426 WP_002869469.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20569.47 Da        Isoelectric Point: 5.0431

>NTDB_id=763723 QMZ12_RS08805 WP_002869474.1 1651900..1652448(-) (ssb) [Campylobacter jejuni strain MS2217]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=763723 QMZ12_RS08805 WP_002869474.1 1651900..1652448(-) (ssb) [Campylobacter jejuni strain MS2217]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.068

96.703

0.368
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363