Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   LDO79_RS01415 Genome accession   NZ_AP024984
Coordinates   253356..254387 (+) Length   343 a.a.
NCBI ID   WP_011227816.1    Uniprot ID   Q5SLM9
Organism   Thermus thermophilus strain JCM10941     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 248356..259387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO79_RS01395 (JCM10941_02630) pstC 249254..250156 (+) 903 WP_011227812.1 phosphate ABC transporter permease subunit PstC -
  LDO79_RS01400 (JCM10941_02640) pstA 250149..251363 (+) 1215 WP_018110995.1 phosphate ABC transporter permease PstA -
  LDO79_RS01405 (JCM10941_02650) pstB 251357..252172 (+) 816 WP_011227814.1 phosphate ABC transporter ATP-binding protein PstB -
  LDO79_RS01410 (JCM10941_02660) - 252182..253354 (+) 1173 WP_011227815.1 MFS transporter -
  LDO79_RS01415 (JCM10941_02670) recF 253356..254387 (+) 1032 WP_011227816.1 DNA replication/repair protein RecF Machinery gene
  LDO79_RS01420 (JCM10941_02680) - 254372..255130 (+) 759 WP_165446277.1 DUF721 domain-containing protein -
  LDO79_RS01425 (JCM10941_02690) - 255131..255907 (+) 777 WP_011227818.1 C40 family peptidase -
  LDO79_RS01430 (JCM10941_02700) - 255861..256781 (-) 921 WP_011227819.1 nitroreductase family protein -
  LDO79_RS01435 (JCM10941_02710) - 256795..257298 (-) 504 WP_011227820.1 DUF2939 domain-containing protein -
  LDO79_RS01440 (JCM10941_02720) pilD 257336..258403 (-) 1068 WP_011227821.1 A24 family peptidase Machinery gene

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37788.64 Da        Isoelectric Point: 8.9580

>NTDB_id=76372 LDO79_RS01415 WP_011227816.1 253356..254387(+) (recF) [Thermus thermophilus strain JCM10941]
MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEVPLGLADLVRFGEEEAWLHAEVETELGAYR
LEHRLGPGGREVLLNGKRVSLRTLWELPGSVLVSPLDLEAVLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNAL
LKAGGEGLSAWDRELARYGDEIVALRRRFLRRFAPILREVHAALAAKEAGLRLEETAGEGVLRALEASRAEERERGQTLV
GPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAQALPQAILA
GLEAPPGVPVCSVVRGVVLCPGA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=76372 LDO79_RS01415 WP_011227816.1 253356..254387(+) (recF) [Thermus thermophilus strain JCM10941]
ATGCGGCTTCTCCTCTTCCGGCAACGGAACTTCCGCAACCTGGCCCTGGAGGCCTACCGCCCCCCGCCGGGCCTTTCCGC
CCTGGTGGGGGCCAACGCCCAGGGGAAGACGAGCCTCCTCCTGGGGATCCACCTGGCCCTAGGGGGGGAGGTCCCCCTGG
GCCTTGCCGACCTCGTCCGCTTCGGGGAGGAGGAGGCCTGGCTCCACGCCGAGGTGGAGACGGAGCTCGGGGCCTACCGC
CTGGAGCACCGCCTGGGCCCCGGGGGGCGGGAGGTCCTCCTCAACGGGAAGCGGGTGAGCCTTCGGACCCTTTGGGAGCT
TCCCGGCTCGGTCCTCGTCTCCCCTCTGGACCTCGAGGCGGTCCTCGGGCCCAAGGAGGAGCGGCGGGCCTACCTGGACC
GGCTCATCGCCCGCTTCTCCCGCCGCTACGCCGCCCTCCTTTCCGCCTACGAGAAGGCGCTGCGCCAGCGGAACGCCCTC
CTCAAGGCCGGGGGGGAGGGCCTTTCCGCCTGGGACCGGGAGCTCGCCCGCTACGGGGACGAGATCGTGGCCCTGAGGCG
CCGCTTCCTCCGGCGCTTCGCCCCCATCCTGCGGGAGGTCCACGCCGCCCTCGCCGCCAAGGAGGCGGGGCTTCGCTTGG
AGGAGACCGCGGGGGAAGGGGTGCTCCGGGCCCTCGAGGCCAGCCGGGCCGAGGAGCGGGAACGGGGCCAGACCCTGGTG
GGGCCCCACCGGGACGACCTGGTCTTCCTCCTGGAGGGGCGGCCCGCCCACCGGTTCGCCAGCCGCGGGGAGGCCAAGAC
CCTGGCCCTGGCCCTGCGCCTCGCCGAGCACCGCCTCCTCGGCGAGCACCACGGCGAGCCCCCCCTCCTCCTCGTGGACG
AGTGGGGGGAGGAGCTGGACGAGGCCCGCAGGCGGGCCGTCCTCGCCTACGCCCAGGCCCTGCCCCAGGCCATCCTGGCG
GGGCTGGAAGCCCCCCCGGGGGTGCCGGTATGCTCGGTGGTACGAGGGGTGGTCCTGTGCCCTGGCGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5ZWU
  PDB 8A8J
  PDB 8A93
  PDB 8BPR

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.136

98.251

0.414

Multiple sequence alignment