Detailed information NTG0076373

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LDO79_RS01440
• Genome accession: NZ_AP024984
• Coordinates: 257336..258403 (-)
• Length: 355 a.a.
• NCBI ID: WP_011227821.1
• Uniprot ID: Q5SLM4
• Organism: Thermus thermophilus strain JCM10941
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 252336..263403

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO79_RS01415 (JCM10941_02670)	recF	253356..254387 (+)	1032	WP_011227816.1	DNA replication/repair protein RecF	Machinery gene
LDO79_RS01420 (JCM10941_02680)	-	254372..255130 (+)	759	WP_165446277.1	DUF721 domain-containing protein	-
LDO79_RS01425 (JCM10941_02690)	-	255131..255907 (+)	777	WP_011227818.1	C40 family peptidase	-
LDO79_RS01430 (JCM10941_02700)	-	255861..256781 (-)	921	WP_011227819.1	nitroreductase family protein	-
LDO79_RS01435 (JCM10941_02710)	-	256795..257298 (-)	504	WP_011227820.1	DUF2939 domain-containing protein	-
LDO79_RS01440 (JCM10941_02720)	pilD	257336..258403 (-)	1068	WP_011227821.1	A24 family peptidase	Machinery gene
LDO79_RS01445 (JCM10941_02730)	-	258470..260002 (+)	1533	WP_011174078.1	thermostable carboxypeptidase 1	-
LDO79_RS01450 (JCM10941_02740)	groL	260066..261697 (-)	1632	WP_011174077.1	chaperonin GroEL	-
LDO79_RS01455 (JCM10941_02750)	groES	261710..262015 (-)	306	WP_011174076.1	co-chaperone GroES	-
LDO79_RS01460 (JCM10941_02760)	-	262112..262759 (-)	648	WP_224065233.1	transposase	-
LDO79_RS01465	-	262701..262886 (+)	186	WP_223966770.1	hypothetical protein	-

Sequence

Protein

• Length: 355 a.a.
• Molecular weight: 37888.18 Da
• Isoelectric Point: 8.1123

>NTDB_id=76373 LDO79_RS01440 WP_011227821.1 257336..258403(-) (pilD) [Thermus thermophilus strain JCM10941]
MWPLFALLLGLAVGSFLNVVVHRLPRGESVAYPPSRCPQCGHRLGPWDLVPVLSYLALKGRCRYCARPISPRYPLVEALT
GGLFLLASLFYPPGVEALLVFLFLAFLVALAFIDVDTFELPDPLTYGLLFLGLLASWALAFPLPFRESLDGSLMAAGGLA
LVAGYGNLFLRRFREARAEVPVGPHQVHMAALFGALLGPGVGMALAFLAWALSARTGRAVALPDRLTLPLLPLAFLLAPA
LGLDFLESLKGSLLAAGGLALAGGLYWAFRPLPEEGEEEPVAMGYGDVKLLGALGAWLGPYAFLALFLGVFAGALLGLLL
RQRKLPFGPYLALGGVVAFFFGEALWGAYLRLLGV

Nucleotide

• Length: 1068 bp

>NTDB_id=76373 LDO79_RS01440 WP_011227821.1 257336..258403(-) (pilD) [Thermus thermophilus strain JCM10941]
ATGTGGCCCCTCTTCGCCCTGCTCCTCGGCCTCGCGGTGGGTTCCTTTCTCAACGTGGTGGTCCACCGCCTGCCCCGGGG
GGAGTCCGTCGCCTACCCCCCGTCCCGCTGCCCCCAGTGCGGCCACCGCCTGGGGCCTTGGGACCTGGTCCCCGTCCTCT
CCTACCTCGCCCTAAAGGGGCGGTGCCGCTACTGCGCCCGTCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTCACG
GGGGGGCTTTTCCTCCTCGCAAGCCTCTTCTACCCCCCTGGGGTGGAGGCCCTCTTGGTCTTCCTCTTCCTCGCCTTTCT
CGTGGCCCTCGCCTTCATTGACGTGGACACCTTTGAGCTTCCCGATCCCCTCACCTACGGCCTCCTCTTCCTTGGGCTTT
TGGCCTCCTGGGCGCTGGCCTTCCCCCTCCCCTTTAGGGAGAGCCTGGACGGAAGCCTCATGGCCGCCGGGGGGCTCGCC
CTGGTGGCGGGGTACGGGAACCTCTTTCTGCGGCGCTTTAGGGAGGCCAGGGCCGAGGTCCCCGTGGGGCCCCACCAGGT
CCACATGGCGGCCCTCTTTGGGGCGCTCTTGGGCCCAGGGGTGGGGATGGCCCTCGCCTTCCTCGCTTGGGCCCTCTCCG
CCCGCACGGGGCGGGCGGTGGCCCTCCCCGACCGGCTCACCCTGCCCCTTTTGCCCCTCGCCTTCCTCCTTGCCCCCGCC
CTAGGCCTGGACTTCCTGGAAAGCCTTAAGGGAAGCCTCCTCGCTGCCGGGGGGCTCGCCCTCGCCGGGGGGCTTTACTG
GGCCTTCCGGCCCCTTCCCGAGGAGGGCGAGGAGGAGCCCGTGGCCATGGGCTACGGGGACGTGAAGCTTCTGGGGGCCC
TCGGGGCCTGGCTCGGCCCTTACGCCTTCCTCGCCCTCTTCCTCGGGGTCTTCGCCGGGGCGCTTTTGGGCCTTCTCCTT
AGGCAAAGGAAGCTCCCCTTCGGCCCCTACCTCGCCCTCGGGGGGGTGGTGGCCTTCTTCTTCGGGGAGGCCCTCTGGGG
GGCGTACCTGCGCCTTCTGGGCGTTTGA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (8-88)

• Type IV leader peptidase family (Peptidase_A24) (207-318)

3D structure

• AlphaFold DB: Q5SLM4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.909	100	0.485