Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OZX59_RS06225 Genome accession   NZ_CP113943
Coordinates   1299053..1299574 (-) Length   173 a.a.
NCBI ID   WP_277125295.1    Uniprot ID   -
Organism   Lactobacillus sp. ESL0681     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1294053..1304574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX59_RS06200 (OZX59_06200) - 1294440..1294598 (-) 159 WP_277125286.1 CsbD family protein -
  OZX59_RS06205 (OZX59_06205) dnaB 1294732..1296114 (-) 1383 WP_277125288.1 replicative DNA helicase -
  OZX59_RS06210 (OZX59_06210) rplI 1296154..1296609 (-) 456 WP_277125289.1 50S ribosomal protein L9 -
  OZX59_RS06215 (OZX59_06215) - 1296622..1298640 (-) 2019 WP_277125291.1 DHH family phosphoesterase -
  OZX59_RS06220 (OZX59_06220) rpsR 1298791..1299027 (-) 237 WP_277125293.1 30S ribosomal protein S18 -
  OZX59_RS06225 (OZX59_06225) ssb 1299053..1299574 (-) 522 WP_277125295.1 single-stranded DNA-binding protein Machinery gene
  OZX59_RS06230 (OZX59_06230) rpsF 1299619..1299915 (-) 297 WP_277125296.1 30S ribosomal protein S6 -
  OZX59_RS06235 (OZX59_06235) gyrA 1300125..1302605 (-) 2481 WP_277125298.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19039.83 Da        Isoelectric Point: 4.7530

>NTDB_id=763680 OZX59_RS06225 WP_277125295.1 1299053..1299574(-) (ssb) [Lactobacillus sp. ESL0681]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNAQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
TYDNKDGQRVYVTEVVVDNFSLLESRKDRETRGQNGGYTPNNNANFGGQNTNNSQNMGSFDQNMPNNNQANTPKDPFAGS
GDTIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=763680 OZX59_RS06225 WP_277125295.1 1299053..1299574(-) (ssb) [Lactobacillus sp. ESL0681]
ATGATTAATCGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTGCGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGATCGTCAGTTTACTAACGCTCAAGGTGAGAGAGGTGCGGATTTTATCAGTTGTGTAATTT
GGCGTAAGGCTGCAGAAAATTTCTGTAACTTTACTTCTAAAGGCTCACTTGTTGGAATTGACGGCCGAATTCAAACCAGA
ACTTACGATAATAAAGACGGGCAAAGAGTCTATGTGACCGAAGTTGTTGTTGACAATTTCTCACTGCTTGAATCACGTAA
AGATCGTGAAACCCGTGGTCAAAATGGTGGTTATACACCGAATAATAATGCGAATTTTGGTGGTCAAAACACTAATAATT
CGCAAAATATGGGATCGTTTGATCAGAATATGCCGAATAACAACCAAGCCAATACGCCTAAAGATCCGTTTGCAGGCTCT
GGTGATACGATTGACATTTCTGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.429

100

0.642
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.448

100

0.538