Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OZX56_RS00040 Genome accession   NZ_CP113941
Coordinates   9247..9768 (+) Length   173 a.a.
NCBI ID   WP_277139702.1    Uniprot ID   -
Organism   Lactobacillus sp. ESL0684     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4247..14768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX56_RS00030 (OZX56_00030) gyrA 6216..8696 (+) 2481 WP_277125298.1 DNA gyrase subunit A -
  OZX56_RS00035 (OZX56_00035) rpsF 8906..9202 (+) 297 WP_277125296.1 30S ribosomal protein S6 -
  OZX56_RS00040 (OZX56_00040) ssb 9247..9768 (+) 522 WP_277139702.1 single-stranded DNA-binding protein Machinery gene
  OZX56_RS00045 (OZX56_00045) rpsR 9794..10030 (+) 237 WP_277125293.1 30S ribosomal protein S18 -
  OZX56_RS00050 (OZX56_00050) - 10180..12198 (+) 2019 WP_277125291.1 DHH family phosphoesterase -
  OZX56_RS00055 (OZX56_00055) rplI 12211..12666 (+) 456 WP_277139704.1 50S ribosomal protein L9 -
  OZX56_RS00060 (OZX56_00060) dnaB 12706..14088 (+) 1383 WP_277139705.1 replicative DNA helicase -
  OZX56_RS00065 (OZX56_00065) - 14222..14380 (+) 159 WP_277125286.1 CsbD family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19069.92 Da        Isoelectric Point: 4.7530

>NTDB_id=763644 OZX56_RS00040 WP_277139702.1 9247..9768(+) (ssb) [Lactobacillus sp. ESL0684]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNAQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
TYDNKDGQRVYVTEVVVDNFSLLESRKDRETRGQNGGYTPNNNANFGGQNTNNSQNMGSFDQNMPNNNQANMPKDPFAGS
GDTIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=763644 OZX56_RS00040 WP_277139702.1 9247..9768(+) (ssb) [Lactobacillus sp. ESL0684]
ATGATTAATCGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTGCGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGATCGTCAGTTTACTAACGCTCAAGGTGAGAGAGGTGCGGATTTTATCAGTTGTGTAATTT
GGCGTAAGGCTGCAGAAAATTTCTGTAACTTTACTTCTAAAGGCTCACTTGTTGGAATTGACGGCCGAATTCAAACCAGA
ACTTACGATAATAAAGACGGGCAAAGAGTCTATGTGACTGAAGTTGTTGTTGACAATTTCTCACTGCTTGAATCACGTAA
AGATCGTGAAACCCGTGGTCAAAATGGTGGTTATACACCGAATAATAATGCGAATTTTGGTGGTCAAAACACTAATAATT
CGCAAAATATGGGATCGTTTGATCAGAATATGCCGAATAACAACCAAGCCAATATGCCTAAAGATCCGTTTGCAGGCTCT
GGTGATACGATTGACATTTCTGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.857

100

0.636
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.448

100

0.538