Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OZX61_RS11060 Genome accession   NZ_CP113932
Coordinates   2298264..2299694 (+) Length   476 a.a.
NCBI ID   WP_277094803.1    Uniprot ID   -
Organism   Acinetobacter sp. ESL0695     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2293264..2304694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX61_RS11040 (OZX61_11040) thrC 2293589..2294734 (+) 1146 WP_195771560.1 threonine synthase -
  OZX61_RS11045 (OZX61_11045) - 2294813..2295814 (-) 1002 WP_195771559.1 serine hydrolase -
  OZX61_RS11050 (OZX61_11050) - 2296041..2296676 (+) 636 WP_195771558.1 response regulator -
  OZX61_RS11055 (OZX61_11055) - 2296685..2298247 (+) 1563 WP_277094802.1 HAMP domain-containing sensor histidine kinase -
  OZX61_RS11060 (OZX61_11060) pilR 2298264..2299694 (+) 1431 WP_277094803.1 sigma-54 dependent transcriptional regulator Regulator
  OZX61_RS11065 (OZX61_11065) - 2299691..2300863 (-) 1173 WP_277094804.1 S41 family peptidase -
  OZX61_RS11070 (OZX61_11070) gpmI 2300874..2302424 (-) 1551 WP_277094805.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  OZX61_RS11075 (OZX61_11075) lptG 2302532..2303602 (-) 1071 WP_277094806.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53860.42 Da        Isoelectric Point: 6.9212

>NTDB_id=763633 OZX61_RS11060 WP_277094803.1 2298264..2299694(+) (pilR) [Acinetobacter sp. ESL0695]
MTINNPKILFVDDEVDLCMLIQMSLKRIHIYCDIAHDVAQAKEKLSKHKYDACLTDLNLPDESGLELVKYVTDHYHDLPI
AVLSAYGNMEIAIAALKAGAFDFLSKPINLESLKNLLEKAFSNKAAEQKLNSSDIEYKLLIGQSPVMNTLRDTLRKVAKT
QAPVFIMGESGTGKEVIAKLVHLLSHRKESTFVPINCGAIPADLMESELFGYVKGSFTGATQNKVGLIQSADGGTLFLDE
IAELPMNMQVKLLRAVQEKCIRPIGSDTEIPVDFRIISATHQNVEQLIQEGKFRQDLFFRLHVMDIQLPPLRERGADIIL
LAKHFLEKICTEWQIPTKEFTISAKDWLMKQRYTGNIRELRNIIERAITLSDGHAISDINLKSINIHKPTPQVETPPQPI
STPVINPTTYTDDSTQIEMQKVWADGLEPYLEAIEKRILIETLNKTYWNRTQAAKKLNMSFRSLRYRLKKFGLDEG

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=763633 OZX61_RS11060 WP_277094803.1 2298264..2299694(+) (pilR) [Acinetobacter sp. ESL0695]
ATGACAATAAATAATCCTAAAATCTTATTCGTCGATGATGAAGTGGATCTATGTATGCTCATCCAAATGAGCTTAAAACG
TATTCATATTTATTGTGATATTGCACATGATGTCGCACAAGCCAAAGAGAAGCTTAGCAAACATAAGTATGATGCTTGCC
TCACTGACTTAAACCTTCCCGATGAAAGTGGATTAGAATTAGTCAAATATGTGACTGATCACTATCACGATTTGCCAATT
GCCGTACTTAGTGCGTATGGCAATATGGAAATTGCAATTGCTGCATTAAAAGCAGGTGCTTTTGACTTTTTGAGCAAGCC
CATCAATTTAGAGTCTCTTAAAAACCTTTTGGAAAAAGCTTTTTCAAACAAGGCAGCAGAACAAAAACTAAATTCATCAG
ACATTGAGTATAAGTTACTTATTGGTCAATCGCCTGTGATGAATACCCTCAGAGATACTTTAAGAAAAGTAGCTAAGACA
CAAGCTCCTGTCTTTATTATGGGCGAATCAGGGACAGGAAAAGAAGTTATCGCAAAATTGGTTCATCTTCTTAGCCATCG
TAAAGAGTCTACTTTTGTTCCAATTAATTGTGGTGCCATTCCAGCAGACCTCATGGAAAGTGAATTATTTGGCTATGTAA
AAGGAAGCTTCACGGGTGCCACACAAAATAAAGTTGGTCTTATACAGTCGGCAGATGGTGGAACACTCTTTTTAGATGAA
ATAGCAGAGCTACCCATGAATATGCAGGTGAAGCTCTTACGTGCAGTACAAGAAAAATGTATTCGCCCGATTGGTTCAGA
TACCGAAATTCCTGTAGATTTCCGCATTATTAGTGCGACACATCAAAATGTAGAGCAACTTATTCAGGAAGGAAAGTTTA
GACAAGATTTATTTTTCCGCTTACATGTCATGGACATTCAACTTCCTCCGTTAAGAGAACGCGGTGCAGACATTATCTTG
CTTGCAAAACACTTCTTAGAAAAAATATGTACAGAATGGCAAATTCCAACAAAAGAATTTACTATTTCAGCCAAAGACTG
GCTTATGAAACAACGCTATACAGGAAATATTCGCGAACTTCGCAATATTATCGAACGTGCTATTACTTTGTCCGATGGAC
ATGCAATTAGTGATATTAATTTAAAATCTATTAATATACATAAACCTACACCACAGGTGGAAACACCTCCACAACCTATA
AGTACTCCTGTCATCAACCCTACTACGTATACCGATGACTCAACTCAAATTGAAATGCAAAAGGTTTGGGCAGATGGTCT
AGAACCTTACTTAGAAGCGATTGAAAAAAGAATTCTTATAGAAACGCTAAATAAAACTTACTGGAATAGAACACAGGCTG
CTAAAAAACTCAATATGTCTTTTCGCTCTTTACGATATCGCCTAAAAAAGTTTGGCTTAGATGAAGGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-307)

Bacterial regulatory protein, Fis family (HTH_8)

(431-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

58.958

100

0.595
  pilR Pseudomonas aeruginosa PAK

44.28

99.16

0.439