Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OZX61_RS09740 Genome accession   NZ_CP113932
Coordinates   2050889..2051419 (+) Length   176 a.a.
NCBI ID   WP_277094684.1    Uniprot ID   -
Organism   Acinetobacter sp. ESL0695     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2045889..2056419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX61_RS09730 (OZX61_09730) - 2047951..2048754 (-) 804 WP_277094682.1 NAD-dependent epimerase/dehydratase family protein -
  OZX61_RS09735 (OZX61_09735) recG 2048773..2050818 (+) 2046 WP_277094683.1 ATP-dependent DNA helicase RecG -
  OZX61_RS09740 (OZX61_09740) comF 2050889..2051419 (+) 531 WP_277094684.1 phosphoribosyltransferase family protein Machinery gene
  OZX61_RS09745 (OZX61_09745) - 2051425..2051994 (-) 570 WP_195772109.1 TIGR00730 family Rossman fold protein -
  OZX61_RS09750 (OZX61_09750) - 2052149..2053159 (+) 1011 WP_195772110.1 CorA family divalent cation transporter -
  OZX61_RS09755 (OZX61_09755) - 2053190..2053483 (-) 294 WP_195772111.1 STAS domain-containing protein -
  OZX61_RS09760 (OZX61_09760) - 2053503..2054126 (-) 624 WP_195772112.1 ABC transporter substrate-binding protein -
  OZX61_RS09765 (OZX61_09765) - 2054147..2054818 (-) 672 WP_277094685.1 outer membrane lipid asymmetry maintenance protein MlaD -
  OZX61_RS09770 (OZX61_09770) mlaE 2054818..2055594 (-) 777 WP_195772114.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  OZX61_RS09775 (OZX61_09775) - 2055591..2056412 (-) 822 WP_277094686.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 20441.80 Da        Isoelectric Point: 10.0105

>NTDB_id=763625 OZX61_RS09740 WP_277094684.1 2050889..2051419(+) (comF) [Acinetobacter sp. ESL0695]
MACWQQLKIKPRYIQKQEVSVLIAASYQFPLNRVIQKFKYNQELQYIDIFKQICSEINLSQDFQAIVPMPISTSRLHQRG
YNQAHLIAKHLSQKYNIPLWTPIKRKHEHSQKGLSRVERLTHIEDQFEIAPSSPLRYRKVLIVDDVITTGSSIFALKNKL
HTLGCNHVEAFCIAAA

Nucleotide


Download         Length: 531 bp        

>NTDB_id=763625 OZX61_RS09740 WP_277094684.1 2050889..2051419(+) (comF) [Acinetobacter sp. ESL0695]
ATGGCCTGTTGGCAACAGCTAAAAATCAAACCAAGATATATTCAAAAGCAAGAAGTATCCGTTCTTATTGCTGCATCCTA
CCAATTTCCACTCAATCGAGTTATTCAGAAGTTCAAGTACAATCAGGAACTCCAGTATATCGATATATTTAAACAAATTT
GCAGCGAAATAAACCTATCTCAAGACTTTCAGGCGATTGTTCCAATGCCTATTTCAACATCACGTTTACATCAAAGGGGT
TACAACCAAGCCCATTTAATTGCAAAGCATCTATCTCAAAAATATAATATTCCCCTTTGGACACCCATAAAAAGAAAACA
TGAGCATAGTCAAAAAGGCCTTTCTCGCGTAGAACGGCTAACACATATTGAAGATCAATTTGAAATTGCACCCTCTAGTC
CGCTACGCTATAGAAAAGTTCTCATTGTTGATGATGTCATCACGACAGGTAGTTCAATTTTTGCGCTCAAAAATAAGCTA
CATACATTAGGGTGTAATCATGTAGAGGCTTTTTGCATTGCAGCTGCCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(86-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

50.575

98.864

0.5
  comF Acinetobacter baumannii D1279779

50

98.864

0.494