Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OZX63_RS00040 Genome accession   NZ_CP113930
Coordinates   9243..9776 (+) Length   177 a.a.
NCBI ID   WP_277132406.1    Uniprot ID   -
Organism   Lactobacillus sp. ESL0700     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4243..14776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX63_RS00030 (OZX63_00030) gyrA 6217..8697 (+) 2481 WP_277143517.1 DNA gyrase subunit A -
  OZX63_RS00035 (OZX63_00035) rpsF 8899..9195 (+) 297 WP_277143519.1 30S ribosomal protein S6 -
  OZX63_RS00040 (OZX63_00040) ssb 9243..9776 (+) 534 WP_277132406.1 single-stranded DNA-binding protein Machinery gene
  OZX63_RS00045 (OZX63_00045) rpsR 9799..10035 (+) 237 WP_090093298.1 30S ribosomal protein S18 -
  OZX63_RS00050 (OZX63_00050) - 10184..12202 (+) 2019 WP_277143521.1 DHH family phosphoesterase -
  OZX63_RS00055 (OZX63_00055) rplI 12215..12670 (+) 456 WP_277143523.1 50S ribosomal protein L9 -
  OZX63_RS00060 (OZX63_00060) dnaB 12710..14095 (+) 1386 WP_277143525.1 replicative DNA helicase -
  OZX63_RS00065 (OZX63_00065) - 14253..14411 (+) 159 WP_277143527.1 CsbD family protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19468.19 Da        Isoelectric Point: 4.9323

>NTDB_id=763590 OZX63_RS00040 WP_277132406.1 9243..9776(+) (ssb) [Lactobacillus sp. ESL0700]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQYTNAQGERGADFISCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
TYDNKDGQRVYVTEVVVDNFALLESRKDRESRSQNGGYTPNNNGNFNGNFGNPNANNSQNMGPSNQNNQNNNQSSMPKDP
FAGSGDTIDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=763590 OZX63_RS00040 WP_277132406.1 9243..9776(+) (ssb) [Lactobacillus sp. ESL0700]
ATGATTAATCGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAGTATACTAACGCTCAAGGTGAGAGAGGTGCGGATTTTATTAGCTGTGTCATTT
GGCGCAAATCAGCAGAAAACTTCTGCAATTTTACGTCTAAAGGATCATTGGTTGGTATTGACGGCCGGATTCAAACCAGA
ACTTACGATAATAAAGACGGGCAAAGAGTATATGTAACAGAGGTTGTCGTTGACAACTTTGCATTGCTCGAGTCACGCAA
AGACCGTGAATCCCGCAGTCAAAATGGTGGTTACACACCAAATAATAATGGGAATTTCAATGGCAACTTTGGTAATCCAA
ATGCCAATAATTCTCAAAATATGGGACCATCTAATCAGAATAACCAAAATAATAATCAATCAAGTATGCCAAAGGATCCA
TTTGCTGGATCTGGGGATACCATTGATATTTCTGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.894

100

0.616
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.618

100

0.559