Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OZX74_RS08680 Genome accession   NZ_CP113914
Coordinates   2126376..2128235 (-) Length   619 a.a.
NCBI ID   WP_277156511.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0798     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2121376..2133235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX74_RS08670 (OZX74_08675) - 2122494..2122988 (-) 495 WP_277156509.1 hypothetical protein -
  OZX74_RS08675 (OZX74_08680) rcrQ 2124397..2126232 (-) 1836 WP_277156510.1 ABC transporter ATP-binding protein Regulator
  OZX74_RS08680 (OZX74_08685) rcrP 2126376..2128235 (-) 1860 WP_277156511.1 ABC transporter ATP-binding protein Regulator
  OZX74_RS08685 (OZX74_08690) - 2128558..2129088 (-) 531 WP_277156512.1 MarR family winged helix-turn-helix transcriptional regulator -
  OZX74_RS08690 (OZX74_08695) - 2129414..2129617 (-) 204 WP_277146035.1 hypothetical protein -
  OZX74_RS08695 (OZX74_08700) - 2130008..2131570 (-) 1563 WP_277156513.1 amino acid permease -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 67617.93 Da        Isoelectric Point: 5.3321

>NTDB_id=763495 OZX74_RS08680 WP_277156511.1 2126376..2128235(-) (rcrP) [Bifidobacterium sp. ESL0798]
MLRISKYLSKTEIGQMLLSLAFIAGQVFFDLKLPDYMSQVTALVETPGSKMADIFKEGGKMLLVSLGSVVCAIAVGYFMA
RVGASFSQRLRSLEFRKVESFGPAEMSRFSTASLITRSTNDITQIQMFITMGVLLVFRAPIMAVWAVCKIAGKGFQWTLA
TGIATVAMLVFVVIIMTLVMPKFRSMQRLTDNINAVARENLTGLRVVRAYNAEDYQEAKFARVNDDLTRTQLFTTRAMAA
MIPVMSSVMNGLGLAIYWIGAYLIKDAALPADKLTDFSNMVVFSSYAMQVIMAFLLLSMVFVLWPRADVSAQRVMEVLDT
EPSVKSGSVREGKPGETGTVEFRNVGFAYPDTRDEMLRGVSFTARRGQTVAFIGSTGSGKSTLVNLVPRFYDTTEGEVLI
DGVNVRDYDIKALRDKIGYVPQQSVMFKGTVASNVSYGDQPGDAETVEVADTSTAAGRKRELELIAGESQRDELSAEQKA
DVRAASEVAQAGEFVDRMEGGYDAPIAQGGSNVSGGQKQRLSIARAVYRHPEIMVFDDSFSALDFKTDRAVRDALKEHAA
DATKLIVAQRVGTIMDADQIVVLDDGKVVGLGTHKELLATCEVYQQIAESQLSPDELAA

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=763495 OZX74_RS08680 WP_277156511.1 2126376..2128235(-) (rcrP) [Bifidobacterium sp. ESL0798]
ATGCTTCGTATCAGCAAATACCTCTCCAAAACGGAGATCGGTCAGATGCTGCTCAGCCTTGCCTTCATCGCCGGCCAGGT
CTTTTTCGATCTGAAGTTGCCGGACTACATGTCGCAGGTCACGGCGCTGGTCGAGACGCCGGGCAGTAAGATGGCTGACA
TCTTCAAAGAGGGCGGCAAGATGCTGCTCGTCTCGCTGGGCTCGGTGGTCTGCGCCATCGCCGTCGGCTACTTCATGGCC
CGCGTCGGCGCCTCGTTCAGCCAACGCCTGCGTTCGCTCGAGTTCCGTAAGGTCGAGTCCTTCGGGCCGGCCGAGATGAG
CAGATTCTCCACGGCCTCGCTCATCACCCGTTCCACCAACGACATCACGCAGATCCAGATGTTCATCACTATGGGCGTCC
TGCTGGTCTTCCGCGCTCCGATCATGGCGGTCTGGGCGGTGTGCAAGATCGCAGGTAAGGGCTTCCAATGGACGCTCGCC
ACAGGGATCGCCACCGTCGCGATGCTGGTGTTCGTCGTCATCATCATGACTCTGGTCATGCCGAAGTTCCGCTCGATGCA
GCGCCTGACCGACAATATCAACGCCGTCGCCCGCGAGAACCTGACCGGCCTGCGCGTCGTCCGCGCCTATAACGCCGAGG
ACTATCAGGAGGCCAAGTTCGCCCGCGTCAATGACGACCTGACCCGCACGCAACTGTTCACCACCCGCGCGATGGCCGCG
ATGATTCCGGTCATGTCCAGCGTGATGAACGGGCTGGGCCTGGCGATTTACTGGATCGGCGCCTACCTCATCAAGGACGC
CGCGCTGCCGGCCGACAAGCTTACCGATTTTTCGAATATGGTCGTCTTTTCCAGCTACGCGATGCAGGTCATCATGGCGT
TCCTGCTCCTAAGCATGGTCTTCGTACTGTGGCCGCGCGCCGACGTCTCCGCCCAGCGCGTCATGGAGGTGTTGGACACC
GAGCCTTCCGTCAAGTCTGGTTCCGTGCGCGAGGGCAAACCCGGCGAGACCGGCACCGTCGAGTTCCGCAACGTCGGCTT
CGCCTACCCGGACACCCGCGACGAGATGCTGCGCGGCGTCAGCTTCACCGCCCGCCGTGGCCAGACCGTTGCCTTCATCG
GCTCCACCGGTTCGGGCAAATCCACGCTGGTCAATCTCGTGCCGCGCTTCTATGACACCACCGAGGGCGAGGTGTTGATC
GACGGCGTCAACGTCCGTGATTACGACATCAAGGCGCTGCGCGACAAGATCGGTTACGTGCCACAGCAATCGGTGATGTT
CAAGGGCACTGTGGCGTCCAACGTCAGCTACGGCGACCAGCCCGGAGATGCCGAAACCGTCGAGGTGGCCGACACCTCAA
CCGCGGCTGGGCGCAAGCGCGAATTGGAGTTGATTGCCGGTGAAAGCCAGCGCGACGAGCTGAGCGCCGAGCAAAAAGCC
GATGTCCGCGCCGCCAGTGAGGTGGCGCAGGCCGGCGAGTTCGTCGACCGCATGGAAGGCGGCTACGATGCGCCGATTGC
GCAAGGCGGCTCCAACGTCTCCGGCGGCCAGAAGCAGCGGCTTTCCATCGCCCGCGCCGTCTACCGCCACCCCGAGATCA
TGGTCTTCGATGACTCGTTCAGCGCGCTCGATTTCAAGACCGACCGTGCGGTGCGCGACGCCCTGAAGGAGCACGCGGCC
GACGCGACCAAGCTCATCGTTGCCCAGCGCGTCGGCACCATCATGGACGCCGACCAGATCGTCGTGCTCGATGATGGCAA
GGTCGTCGGCCTCGGCACGCACAAGGAGCTGCTCGCCACCTGCGAGGTCTACCAGCAGATCGCCGAGTCCCAGCTGAGTC
CCGACGAGCTGGCTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(61-294)

ABC transporter (ABC_tran)

(357-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.363

100

0.501