Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   M2Z51_RS09895 Genome accession   NZ_AP024967
Coordinates   2196280..2197944 (+) Length   554 a.a.
NCBI ID   WP_032477041.1    Uniprot ID   -
Organism   Vibrio cholerae strain V130003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2191280..2202944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Z51_RS09875 (V130003_19710) dnaK 2192347..2194254 (-) 1908 WP_000516147.1 molecular chaperone DnaK -
  M2Z51_RS09880 - 2194412..2194525 (+) 114 WP_228006377.1 transporter -
  M2Z51_RS09885 (V130003_19720) grpE 2194518..2195120 (-) 603 WP_000064037.1 nucleotide exchange factor GrpE -
  M2Z51_RS09890 (V130003_19730) nadK 2195266..2196150 (+) 885 WP_000742830.1 NAD(+) kinase -
  M2Z51_RS09895 (V130003_19740) recN 2196280..2197944 (+) 1665 WP_032477041.1 DNA repair protein RecN Machinery gene
  M2Z51_RS09900 (V130003_19750) bamE 2198103..2198462 (+) 360 WP_001160909.1 outer membrane protein assembly factor BamE -
  M2Z51_RS09905 (V130003_19760) - 2198540..2198845 (-) 306 WP_001918351.1 RnfH family protein -
  M2Z51_RS09910 (V130003_19770) - 2198848..2199282 (-) 435 WP_000815880.1 type II toxin-antitoxin system RatA family toxin -
  M2Z51_RS09915 (V130003_19780) smpB 2199466..2199951 (+) 486 WP_000162689.1 SsrA-binding protein SmpB -
  M2Z51_RS09925 (V130003_19790) - 2200552..2201793 (+) 1242 WP_032477040.1 integrase domain-containing protein -

Sequence

Protein


Download         Length: 554 a.a.        Molecular weight: 61289.98 Da        Isoelectric Point: 5.5670

>NTDB_id=76337 M2Z51_RS09895 WP_032477041.1 2196280..2197944(+) (recN) [Vibrio cholerae strain V130003]
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGEDKTEVSAAFHLDNNLLASRWL
EDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHDDLLKATR
HAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQIKELNELALGEDEFVELEQEHKRLANSGDLALNCQRAIELLNEGEEV
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAYVEERYSKVMSLARKHHVLPE
ELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQTFVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVLQD
SAHSSPLGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQITESTLANAKELLIAA

Nucleotide


Download         Length: 1665 bp        

>NTDB_id=76337 M2Z51_RS09895 WP_032477041.1 2196280..2197944(+) (recN) [Vibrio cholerae strain V130003]
ATGCTGGCTCACTTAAGTATCAATAACTTCGCTATCGTAAAGTCACTACAACTCGAATTATCAAAAGGAATGACCACCAT
CACCGGCGAAACCGGTGCCGGTAAATCCATTGCGATTGATGCTTTAGGTTTATGCCTTGGTGGTCGAGCCGAAGCCAGCA
TGGTGCGTCAAGGTGAAGATAAAACCGAAGTCAGCGCCGCCTTTCATCTGGATAACAATCTGCTCGCCAGCCGTTGGTTA
GAAGATAATGAACTGCTTGAAGGCAAAGAGTGCATTTTGCGCCGAATCATCACCAAAGATGGGCGCTCTAAAGCCTTTAT
TAATGGCAGCCCAGTTCCGCTCTCTCAACTCAAAACGTTGGGGCAACTGCTGATCAATGTGCATGGTCAACACGCACATC
AGCAACTGATGAAACCAGAATATCAACTCAGCATGCTTGATCAATACGCAGGTCATGACGACTTGCTCAAAGCCACGCGT
CACGCCTATCAAAATTGGCGTCAAGCGAGCAATCAGCTCAAACAGCTGCGCGAAAATAGCCAACAAAATCAGGCACAATT
ACAACTTTTGGAATACCAAATCAAAGAGCTCAACGAATTAGCTCTCGGTGAGGATGAGTTTGTCGAGCTAGAACAAGAGC
ATAAACGCTTAGCCAATAGCGGCGATCTGGCACTCAACTGCCAACGCGCGATTGAACTGCTCAATGAAGGGGAAGAAGTA
AACGCCTTAGGCCTTTTACAAAGTGTTAGCCATACGCTGATTGATCTGGCTGAAATGGATAGCAAGCTGACAGCGCTCCC
TTCTATGGTGGCCGAAGCGCTGATCCAACTTGAAGAGACTTACCATGAACTGCGCAACTACTTGGATTCGATTGATGTCG
ACCCAGAACGCATGGCGTATGTAGAAGAGCGCTACTCCAAAGTCATGTCGCTCGCGCGTAAACATCATGTACTGCCAGAA
GAGCTGTATCAGCATCACCAAGCACTCTTGCAGCAAATTGCTCAGCTAGATTGTTCTGACGAGAAAATGTCAGCACTCGC
GAGTGAAGTCGACGTGCTCTACCAAACCTTTGTTGCGGCCGCTGACAAACTGCACAAATCTCGTGTTCGCTATGCCAAAG
AATTGGATAAATTGATTAGCCAAAGCATGCATGAGCTGAGCATGGAAAAAGCGCAATTCAAAATCGAAGTGCTGCAAGAC
AGCGCGCACTCATCGCCATTAGGTTTTGATGCCGTGACTTTCTTAGTCTCGACGAACCCGGGTCAACCGCTGCAACCCAT
CGCCAAAGTGGCCTCTGGTGGTGAACTGTCACGGATGTCATTGGCGATCCAAGTGATTACTGCGCAGAAGGTCGATACTC
CAAGCCTGATTTTTGATGAAGTTGACGTGGGTATTTCAGGGCCAACAGCAGCCGTAGTTGGCAAACTACTGCGCAAATTG
GGCGAGTCGACTCAAGTACTGTGTGTCACCCACTTACCGCAAGTGGCAGGTTGCGGACACCATCAACTGTTTGTCGCCAA
ACAGACCAAAGCAGGCAAAACCGAAACGCAAATGCTCAAACTGGATCAAGAACAGCGCATTGCTGAACTGGCGCGCTTGC
TCGGAGGCAGCCAAATTACCGAATCCACGCTCGCGAATGCTAAAGAGCTATTAATCGCAGCCTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

37.3

100

0.379
  recN Bacillus subtilis subsp. subtilis str. 168

35.192

100

0.365