Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OXH74_RS19615 Genome accession   NZ_CP113889
Coordinates   4194347..4194982 (+) Length   211 a.a.
NCBI ID   WP_215370278.1    Uniprot ID   -
Organism   Pseudomonas boanensis strain L337     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4189347..4199982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXH74_RS19595 (OXH74_19550) lolD 4189365..4190048 (+) 684 WP_375738448.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  OXH74_RS19600 (OXH74_19555) - 4190050..4191294 (+) 1245 WP_375738449.1 lipoprotein-releasing ABC transporter permease subunit -
  OXH74_RS19605 (OXH74_19560) - 4191355..4191879 (-) 525 WP_375738451.1 DUF2062 domain-containing protein -
  OXH74_RS19610 (OXH74_19565) comA 4192043..4194274 (+) 2232 WP_375738452.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OXH74_RS19615 (OXH74_19570) exbB 4194347..4194982 (+) 636 WP_215370278.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OXH74_RS19620 (OXH74_19575) - 4194979..4195422 (+) 444 WP_375738453.1 ExbD/TolR family protein -
  OXH74_RS19625 (OXH74_19580) lpxK 4195422..4196426 (+) 1005 WP_375738454.1 tetraacyldisaccharide 4'-kinase -
  OXH74_RS19630 (OXH74_19585) - 4196467..4196652 (+) 186 WP_215370287.1 Trm112 family protein -
  OXH74_RS19635 (OXH74_19590) kdsB 4196649..4197413 (+) 765 WP_375738455.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OXH74_RS19640 (OXH74_19595) - 4197413..4197874 (+) 462 WP_375738456.1 low molecular weight protein-tyrosine-phosphatase -
  OXH74_RS19645 (OXH74_19600) murB 4197871..4198890 (+) 1020 WP_375738457.1 UDP-N-acetylmuramate dehydrogenase -
  OXH74_RS19650 (OXH74_19605) - 4198990..4199271 (-) 282 WP_375738458.1 pyrimidine/purine nucleoside phosphorylase -
  OXH74_RS19655 (OXH74_19610) - 4199335..4199889 (-) 555 WP_375738459.1 exonuclease domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23109.35 Da        Isoelectric Point: 6.8680

>NTDB_id=763365 OXH74_RS19615 WP_215370278.1 4194347..4194982(+) (exbB) [Pseudomonas boanensis strain L337]
MWELVKAGGWMMLPIILCSIAATAIIAERLWTLRISRVSPPHLLGQVWRQIKDKQLNVQRLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIEIFSGFMENGMANAPILAGGIAKALVTTAA
GLIVAIPAVFFHRYLLRRVDELVVAMEQEAIKLVEVVQGDREVDFAEETKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=763365 OXH74_RS19615 WP_215370278.1 4194347..4194982(+) (exbB) [Pseudomonas boanensis strain L337]
GTGTGGGAGCTGGTCAAAGCCGGCGGCTGGATGATGCTGCCGATTATTCTGTGTTCCATCGCCGCCACCGCCATCATCGC
TGAGCGTCTATGGACATTGCGTATAAGCCGTGTATCTCCACCTCACCTGCTCGGGCAGGTCTGGCGTCAGATCAAGGACA
AACAACTGAATGTCCAAAGGCTCAAGGAGTTGCGGGCATCGTCCCCGCTTGGCGAGGTGCTGGCTGCGGGGCTGGCTAAC
TCCAAGCATGGCCGCGAAATCATGAAAGAGTGCATTGAAGAGGCGGCCAGCCGAGTCATCCATGAACTGGAACGCTATCT
CAACGCTCTGGGGACCATCGCCGCCATGGCTCCGCTGCTGGGCCTCCTGGGCACAGTGTTCGGCATGATCGAGATTTTCA
GTGGCTTCATGGAAAACGGCATGGCGAATGCCCCCATCCTGGCGGGCGGTATTGCCAAGGCTCTGGTGACAACTGCTGCA
GGCCTCATCGTTGCGATTCCTGCGGTGTTCTTCCACCGCTATCTGCTGCGTCGGGTCGATGAACTGGTGGTGGCCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAGTCGTACAGGGCGACCGTGAAGTGGATTTCGCAGAGGAAACCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.575

98.104

0.82