Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OXH74_RS06220 Genome accession   NZ_CP113889
Coordinates   1358819..1360954 (-) Length   711 a.a.
NCBI ID   WP_375741573.1    Uniprot ID   -
Organism   Pseudomonas boanensis strain L337     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1353819..1365954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXH74_RS06205 (OXH74_06190) - 1355487..1357130 (-) 1644 WP_375740502.1 AAA family ATPase -
  OXH74_RS06210 (OXH74_06195) aroB 1357139..1358242 (-) 1104 WP_375740503.1 3-dehydroquinate synthase -
  OXH74_RS06215 (OXH74_06200) aroK 1358295..1358813 (-) 519 WP_375741572.1 shikimate kinase AroK -
  OXH74_RS06220 (OXH74_06205) pilQ 1358819..1360954 (-) 2136 WP_375741573.1 type IV pilus secretin PilQ Machinery gene
  OXH74_RS06225 (OXH74_06210) pilP 1361009..1361542 (-) 534 WP_375740504.1 type 4a pilus biogenesis lipoprotein PilP -
  OXH74_RS06230 (OXH74_06215) pilO 1361539..1362162 (-) 624 WP_375740505.1 type 4a pilus biogenesis protein PilO -
  OXH74_RS06235 (OXH74_06220) pilN 1362159..1362764 (-) 606 WP_375740506.1 type 4a pilus biogenesis protein PilN -
  OXH74_RS06240 (OXH74_06225) pilM 1362764..1363828 (-) 1065 WP_375740507.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 76206.59 Da        Isoelectric Point: 4.8883

>NTDB_id=763345 OXH74_RS06220 WP_375741573.1 1358819..1360954(-) (pilQ) [Pseudomonas boanensis strain L337]
MKSSLSRLGITLLAALLSPAVLAANLLALDVAALPGDRVELKLGFDEPVSAPRGYTIEQPARIALDLPGVSNKLGSKNRE
LGVGNARSVTVVEAKDRTRLIINLSSLVPYSTRVEGRNLYVLVGVSAPSQAARTAPAPVPAPAPLAASQPARSYASAGKA
IENIDFQRGEQGEGNVVITLSDPSVSPDIQEQGGKIRLDFAKTQLPEPLRVRLDVKDFATPVQFVSASGSGDKASISIEP
TGFYDYLAYQTDNKLTVSIKPLSQGDAEKRKADRFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRL
QNVPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIAELAPLRRELIQVNYAKASDIAKLFQSVTSS
DPAAAGADERGSITVDDRTNSIIAYQTQDKLDELRRIVTQLDIPVRQVMIEARIVEANVDYDKALGVRWGGAFTSGNWAG
FGKDGNIGIEDEDGVSCGPFAGNCTLPTNESDSPVPFVDMGAVNSTSGIGIGFISNHAILDLQLSAMEKTGNGEIVSQPK
VVTADKETAKILKGAEIPYQEASSSGATTTSFKEAALSLEVTPQITPDNRIIMEVKVTKDAPDFANALNGVPPINKNEVN
AKVLVNDGETIVIGGVFSNTQIKAVDKVPFLGDLPFLGRLFRRDVVQDKKSELLVFLTPRIMNSQAIAVSR

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=763345 OXH74_RS06220 WP_375741573.1 1358819..1360954(-) (pilQ) [Pseudomonas boanensis strain L337]
ATGAAAAGCTCGCTATCGCGCCTCGGTATAACGCTATTGGCTGCCCTGCTGTCACCAGCAGTCCTGGCGGCGAACCTGCT
GGCGCTGGACGTCGCGGCCCTGCCAGGCGACAGGGTCGAACTCAAGCTGGGCTTCGACGAGCCGGTGAGTGCTCCGCGCG
GTTACACCATCGAGCAGCCGGCGCGGATCGCACTCGATCTGCCGGGTGTATCCAACAAGCTCGGCAGCAAGAATCGTGAG
CTCGGTGTTGGCAATGCGCGCAGCGTGACCGTGGTCGAGGCCAAGGATCGCACGCGCCTGATCATCAACCTGTCCAGCCT
GGTGCCGTACAGCACCCGCGTCGAAGGTCGAAACCTTTACGTGCTCGTCGGAGTCTCGGCACCCAGCCAGGCCGCGCGCA
CTGCGCCGGCGCCGGTCCCTGCTCCGGCACCGCTGGCTGCATCGCAACCCGCTCGCAGCTATGCGTCTGCTGGCAAGGCC
ATCGAGAACATCGACTTCCAGCGAGGCGAGCAGGGCGAAGGCAATGTCGTCATCACTCTCTCCGACCCCAGCGTAAGCCC
GGATATCCAGGAGCAGGGCGGCAAGATTCGTCTGGACTTCGCCAAAACCCAGCTGCCAGAGCCACTCCGGGTGCGCCTGG
ATGTGAAGGATTTCGCCACGCCCGTACAGTTCGTCAGTGCCTCGGGTTCGGGCGACAAGGCGAGCATCAGCATCGAGCCG
ACCGGTTTCTACGATTACCTGGCCTACCAGACTGACAACAAACTGACCGTCAGCATCAAACCCCTGAGCCAAGGCGATGC
CGAGAAGCGCAAGGCTGATCGCTTCGCCTACAGCGGTGAGAAGCTGTCACTGAACTTCCAGGACATCGATGTGCGCTCGG
TGCTGCAGCTGATCGCGGACTTCACCGACCTGAACCTTGTGGCTTCCGACACTGTGCAGGGCAATATCACCCTGCGCCTG
CAGAACGTGCCCTGGGATCAGGCGCTGGACCTGGTGTTGAAAACCAAGGGGTTGGACAAGCGCAAAGTCGGTAATGTCCT
GCTGGTTGCGCCGGCCGACGAGATCGCGGCTCGCGAGCGCCAGGAGCTGGAATCGCAGAAGCAGATTGCCGAGTTGGCTC
CCCTGCGTCGTGAGCTGATCCAGGTGAACTATGCCAAGGCCTCGGACATCGCCAAGCTGTTCCAGTCGGTTACCAGCAGT
GATCCGGCTGCTGCCGGTGCTGACGAGCGCGGCTCGATCACCGTCGACGACCGCACCAACAGCATCATCGCCTACCAGAC
CCAGGACAAGCTGGATGAGCTGCGCCGCATCGTCACCCAATTGGATATTCCGGTGCGTCAGGTCATGATCGAAGCGCGCA
TCGTCGAAGCCAACGTCGACTACGACAAGGCATTGGGTGTTCGCTGGGGTGGGGCATTCACCAGCGGCAACTGGGCTGGC
TTTGGCAAGGACGGCAACATTGGTATCGAAGATGAGGACGGCGTGAGCTGTGGTCCCTTCGCTGGCAACTGTACGCTGCC
GACCAATGAAAGCGACTCGCCGGTGCCTTTCGTCGACATGGGGGCGGTGAACAGCACCTCGGGTATCGGCATCGGTTTCA
TTTCCAACCACGCCATCCTGGATCTCCAGCTCTCGGCCATGGAGAAGACCGGCAACGGCGAGATCGTTTCGCAGCCCAAG
GTCGTCACTGCCGACAAGGAAACCGCGAAGATCCTCAAGGGTGCCGAAATTCCCTACCAGGAGGCCAGCTCCAGCGGTGC
GACCACCACTTCCTTCAAGGAGGCGGCGCTGTCCCTGGAAGTGACGCCGCAGATCACCCCGGACAACCGCATCATCATGG
AAGTGAAAGTGACCAAGGATGCGCCGGACTTTGCCAATGCCCTGAACGGCGTACCGCCGATCAACAAGAACGAGGTCAAC
GCCAAGGTGCTGGTCAATGATGGCGAGACCATCGTCATCGGTGGCGTGTTCTCCAACACCCAGATCAAGGCGGTGGACAA
GGTGCCGTTCCTGGGGGATCTGCCCTTCCTTGGTCGACTGTTCCGTCGTGATGTTGTGCAGGACAAGAAATCTGAGCTGT
TGGTATTTCTCACTCCGCGTATCATGAACAGCCAGGCCATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(546-702)

AMIN domain (AMIN)

(49-119)

Secretin and TonB N terminus short domain (STN)

(305-351)

Bacterial type II/III secretion system short domain (Secretin_N)

(379-447)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

80.559

100

0.81
  comQ Acinetobacter baylyi ADP1

42.755

98.031

0.419
  pilQ Acinetobacter baumannii strain A118

40.434

100

0.419
  pilQ Acinetobacter baumannii D1279779

40.434

100

0.419
  pilQ Legionella pneumophila strain ERS1305867

37.775

96.062

0.363
  pilQ Legionella pneumophila strain Lp02

37.5

96.765

0.363