Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OXH74_RS04035 Genome accession   NZ_CP113889
Coordinates   864779..866371 (+) Length   530 a.a.
NCBI ID   WP_375740168.1    Uniprot ID   -
Organism   Pseudomonas boanensis strain L337     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 859779..871371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXH74_RS04015 (OXH74_04015) - 861060..861782 (+) 723 WP_375740165.1 GntR family transcriptional regulator -
  OXH74_RS04020 (OXH74_04020) - 861779..862606 (+) 828 WP_375740166.1 inositol monophosphatase family protein -
  OXH74_RS04025 (OXH74_04025) - 862736..864367 (-) 1632 WP_375740167.1 NAD+ synthase -
  OXH74_RS04030 (OXH74_04030) - 864553..864789 (+) 237 WP_215373029.1 PP0621 family protein -
  OXH74_RS04035 (OXH74_04035) pilS 864779..866371 (+) 1593 WP_375740168.1 PAS domain-containing sensor histidine kinase Regulator
  OXH74_RS04040 (OXH74_04040) pilR 866374..867711 (+) 1338 WP_375740169.1 sigma-54-dependent transcriptional regulator Regulator
  OXH74_RS04045 (OXH74_04045) thiO 868930..870021 (-) 1092 WP_375740170.1 glycine oxidase ThiO -
  OXH74_RS04050 (OXH74_04050) - 870221..870757 (-) 537 WP_375740171.1 GspH/FimT family pseudopilin -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58706.58 Da        Isoelectric Point: 7.5300

>NTDB_id=763342 OXH74_RS04035 WP_375740168.1 864779..866371(+) (pilS) [Pseudomonas boanensis strain L337]
MSAESLNGVGPQARRIFRLYNLYRLSIGLLLVLLISSELDDQLLNPVNADLFRKGSWFYLILNVLVATLVAQPRRMVQIF
SLALVDVLLLSGLFFAAGGTPSGIGNLLIVSVAISNSLLRGRIGLLVAAVAAIGLIYLTFYLSLIYPQVSSQFVQAGALG
ALCFAAALFVQAASKRLQRSESLAEQRAEDVANLEALNAQILERMRTGILVLDPLHRILLANQGAQTLLGKEGLAGKPLA
PQCPELLHCYEQWVSNPTLRPPSFQAFTDGPTLQPSFVPLPQGRQENILVFLDDISQVAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLHESEDLPGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQSDPQLLDLKYWLTRFASEFRSSASTN
QTLHLASIGSTLQTRMDPHQLTQVLTNLVENGLRYSAQKHTQGQVWLKLFRDPESDLPVLEVEDDGEGVPEEHRPHIFEP
FYTTENKGTGLGLYISRELCESNQARLDYKPREQGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=763342 OXH74_RS04035 WP_375740168.1 864779..866371(+) (pilS) [Pseudomonas boanensis strain L337]
GTGAGCGCTGAGAGCCTGAACGGAGTCGGTCCGCAGGCACGACGCATTTTCCGCCTCTACAACCTTTATCGGTTGTCGAT
CGGCCTGCTACTCGTGCTACTGATTTCCAGCGAGCTCGACGACCAGTTGCTGAACCCCGTCAATGCGGACCTGTTCCGCA
AGGGCAGCTGGTTCTACCTGATCCTCAACGTACTGGTCGCGACGCTGGTCGCCCAACCCCGGCGCATGGTGCAGATATTC
AGCCTTGCCCTGGTGGATGTGCTGCTGCTGTCCGGCCTGTTCTTCGCTGCAGGCGGCACTCCCAGCGGCATCGGCAACCT
GCTGATCGTCTCGGTGGCGATCTCCAACTCACTGTTGCGCGGTCGCATCGGTCTGCTGGTGGCGGCGGTGGCGGCCATCG
GCCTGATCTACCTGACCTTCTACCTCAGCCTCATCTACCCGCAGGTGTCCAGCCAGTTCGTCCAGGCCGGCGCATTGGGC
GCCCTTTGCTTCGCCGCTGCGCTGTTCGTCCAGGCAGCCAGCAAGCGACTGCAACGCAGCGAAAGCCTGGCCGAGCAACG
GGCGGAGGACGTAGCCAACCTCGAAGCGCTCAATGCGCAGATCCTCGAGCGCATGCGCACCGGCATCCTGGTCCTGGACC
CCTTGCACCGTATCCTCCTGGCCAACCAGGGCGCCCAGACCCTGCTCGGCAAGGAAGGTCTTGCCGGCAAACCACTTGCC
CCGCAATGCCCGGAGCTGCTGCATTGCTACGAACAGTGGGTCAGCAACCCCACATTGCGACCACCAAGTTTCCAGGCCTT
CACCGACGGCCCGACACTGCAGCCCAGCTTCGTTCCACTGCCCCAGGGCAGGCAGGAAAACATCCTCGTGTTTCTCGACG
ATATTTCCCAGGTGGCGCAGCAGGCCCAACAACTGAAACTGGCCTCTCTGGGGCGCCTCACCGCGGGCATCGCCCACGAA
ATCCGCAACCCGCTTGGGGCCATCAGCCATGCTGCGCAGCTGTTGCATGAGTCGGAGGACCTGCCAGGGCCCGACCGGCG
TCTGGCGCAGATCATCCAGGACCATTCGCGACGCATGAACCTGGTGATCGAGAACGTATTGCAACTGTCCCGTCGCCGCC
AGTCAGACCCCCAGTTGCTGGACCTCAAGTACTGGCTGACCCGCTTCGCCAGTGAGTTTCGCAGCTCCGCCAGTACTAAC
CAGACCCTTCATCTGGCCAGCATTGGCAGCACCCTGCAGACACGCATGGACCCGCACCAGCTGACTCAGGTCCTGACCAA
CCTGGTCGAGAACGGCCTGCGCTACAGCGCCCAGAAGCACACGCAAGGCCAGGTGTGGCTCAAGCTGTTCCGCGACCCGG
AAAGCGATCTGCCGGTGCTCGAGGTCGAGGACGACGGCGAGGGCGTGCCGGAAGAGCACCGACCGCACATCTTCGAGCCC
TTCTACACCACCGAAAACAAAGGCACGGGGCTCGGGTTGTATATTTCCCGCGAACTCTGCGAGAGCAACCAGGCTCGCCT
CGACTACAAACCCCGCGAGCAAGGCGGCAGCTGCTTCCGTATCACCTTTGCCCATCCGCGCAAACTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(200-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.906

100

0.649