Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMK16_RS05265 Genome accession   NZ_CP125396
Coordinates   1008958..1009509 (+) Length   183 a.a.
NCBI ID   WP_002856575.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC57     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1003958..1014509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK16_RS05235 (QMK16_05235) pgsA 1004054..1004590 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QMK16_RS05240 (QMK16_05240) rseP 1004587..1005693 (+) 1107 WP_002858350.1 RIP metalloprotease RseP -
  QMK16_RS05245 (QMK16_05245) - 1005686..1006558 (+) 873 WP_002858448.1 VirK family antimicrobial peptide resistance protein -
  QMK16_RS05250 (QMK16_05250) - 1006536..1007891 (-) 1356 WP_002863358.1 FAD-dependent oxidoreductase -
  QMK16_RS05255 (QMK16_05255) - 1007906..1008343 (-) 438 WP_002857985.1 DUF302 domain-containing protein -
  QMK16_RS05260 (QMK16_05260) rpsF 1008572..1008949 (+) 378 WP_002858097.1 30S ribosomal protein S6 -
  QMK16_RS05265 (QMK16_05265) ssb 1008958..1009509 (+) 552 WP_002856575.1 single-stranded DNA-binding protein Machinery gene
  QMK16_RS05270 (QMK16_05270) rpsR 1009520..1009780 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  QMK16_RS05275 (QMK16_05275) lon 1009841..1012216 (-) 2376 WP_002858084.1 endopeptidase La -
  QMK16_RS05280 (QMK16_05280) - 1012233..1012880 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  QMK16_RS05285 (QMK16_05285) fliW 1013041..1013430 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  QMK16_RS05290 (QMK16_05290) proC 1013430..1014161 (+) 732 WP_002858388.1 pyrroline-5-carboxylate reductase Machinery gene
  QMK16_RS05295 (QMK16_05295) ctsT 1014158..1014460 (+) 303 WP_283147443.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20800.68 Da        Isoelectric Point: 5.0431

>NTDB_id=763262 QMK16_RS05265 WP_002856575.1 1008958..1009509(+) (ssb) [Campylobacter jejuni strain SKBC57]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPTPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=763262 QMK16_RS05265 WP_002856575.1 1008958..1009509(+) (ssb) [Campylobacter jejuni strain SKBC57]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGCGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCTGCTATCGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAGGAAACTTGCTTTATTGATATAAGTT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAACAAACCCTACTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372