Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QMK12_RS05655 Genome accession   NZ_CP125395
Coordinates   1112502..1113368 (-) Length   288 a.a.
NCBI ID   WP_283155417.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC94     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1107502..1118368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK12_RS05635 (QMK12_05635) metF 1109355..1110203 (+) 849 WP_283155416.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  QMK12_RS05640 (QMK12_05640) - 1110225..1110416 (-) 192 WP_002852856.1 membrane protein -
  QMK12_RS05645 (QMK12_05645) atpB 1110413..1111093 (-) 681 WP_002908551.1 F0F1 ATP synthase subunit A -
  QMK12_RS05650 (QMK12_05650) radA 1111162..1112502 (-) 1341 WP_002870828.1 DNA repair protein RadA Machinery gene
  QMK12_RS05655 (QMK12_05655) pilA 1112502..1113368 (-) 867 WP_283155417.1 signal recognition particle-docking protein FtsY Machinery gene
  QMK12_RS05660 (QMK12_05660) - 1113368..1113925 (-) 558 WP_088303488.1 TlpA disulfide reductase family protein -
  QMK12_RS05665 (QMK12_05665) - 1114008..1114634 (+) 627 WP_070300575.1 5-formyltetrahydrofolate cyclo-ligase -
  QMK12_RS05670 (QMK12_05670) rny 1114555..1116108 (+) 1554 WP_126230125.1 ribonuclease Y -
  QMK12_RS05675 (QMK12_05675) - 1116117..1116674 (+) 558 WP_002853883.1 DedA family protein -
  QMK12_RS05680 (QMK12_05680) - 1116674..1117933 (+) 1260 WP_134239856.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32016.98 Da        Isoelectric Point: 5.4929

>NTDB_id=763225 QMK12_RS05655 WP_283155417.1 1112502..1113368(-) (pilA) [Campylobacter jejuni strain SKBC94]
MFNFFKKGLAKTLENIIGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKHVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=763225 QMK12_RS05655 WP_283155417.1 1112502..1113368(-) (pilA) [Campylobacter jejuni strain SKBC94]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTATTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCATGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGGGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTAATTATCGATACAGCAGGCCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGCGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTACTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437