Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QMK12_RS05650 Genome accession   NZ_CP125395
Coordinates   1111162..1112502 (-) Length   446 a.a.
NCBI ID   WP_002870828.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC94     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1106162..1117502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK12_RS05625 (QMK12_05625) - 1106299..1107069 (+) 771 WP_032589959.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  QMK12_RS05630 (QMK12_05630) metE 1107081..1109345 (+) 2265 Protein_1087 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  QMK12_RS05635 (QMK12_05635) metF 1109355..1110203 (+) 849 WP_283155416.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  QMK12_RS05640 (QMK12_05640) - 1110225..1110416 (-) 192 WP_002852856.1 membrane protein -
  QMK12_RS05645 (QMK12_05645) atpB 1110413..1111093 (-) 681 WP_002908551.1 F0F1 ATP synthase subunit A -
  QMK12_RS05650 (QMK12_05650) radA 1111162..1112502 (-) 1341 WP_002870828.1 DNA repair protein RadA Machinery gene
  QMK12_RS05655 (QMK12_05655) pilA 1112502..1113368 (-) 867 WP_283155417.1 signal recognition particle-docking protein FtsY Machinery gene
  QMK12_RS05660 (QMK12_05660) - 1113368..1113925 (-) 558 WP_088303488.1 TlpA disulfide reductase family protein -
  QMK12_RS05665 (QMK12_05665) - 1114008..1114634 (+) 627 WP_070300575.1 5-formyltetrahydrofolate cyclo-ligase -
  QMK12_RS05670 (QMK12_05670) rny 1114555..1116108 (+) 1554 WP_126230125.1 ribonuclease Y -
  QMK12_RS05675 (QMK12_05675) - 1116117..1116674 (+) 558 WP_002853883.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49038.94 Da        Isoelectric Point: 6.9288

>NTDB_id=763224 QMK12_RS05650 WP_002870828.1 1111162..1112502(-) (radA) [Campylobacter jejuni strain SKBC94]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFIELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIVDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=763224 QMK12_RS05650 WP_002870828.1 1111162..1112502(-) (radA) [Campylobacter jejuni strain SKBC94]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTATAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGTATGAAAA
CAAGTGAGGCTGTTTGTATTGAAGATGTGGAGTTAGAACATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCCCAGATTAAAT
TAAGAGCTGATCGTCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGCATTCTTATCGTTGATTCTATACAAACTCTATATTCAAATAAAATCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTTGAACTTATGCGTGTTAGCAAGGCTTATAATATCAGTACTTTTATCATAG
GGCATATTACTAAAGAAGGTGCTATAGCAGGGCCTAGGGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAAGGA
GATGCCACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATTAGCGCAAAAGATTTAGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCCTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAACTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTGGCTGTGGTTGCAGCTATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGAGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCTATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGACTTAAGTGTTTTGTTGCTAAAGAACTTTCACAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

AAA domain (AAA_25)

(71-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

45.638

100

0.457
  radA Streptococcus pneumoniae Rx1

45.638

100

0.457
  radA Streptococcus pneumoniae D39

45.638

100

0.457
  radA Streptococcus pneumoniae TIGR4

45.638

100

0.457
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.667

97.534

0.455
  radA Streptococcus mitis SK321

45.618

99.776

0.455
  radA Streptococcus mitis NCTC 12261

45.618

99.776

0.455