Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OZE10_RS10060 Genome accession   NZ_CP113831
Coordinates   1949795..1950322 (-) Length   175 a.a.
NCBI ID   WP_010776361.1    Uniprot ID   -
Organism   Enterococcus faecalis strain T30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1944795..1955322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZE10_RS09995 (OZE10_09995) - 1944967..1945383 (-) 417 WP_002357362.1 ArpU family phage packaging/lysis transcriptional regulator -
  OZE10_RS10000 (OZE10_10000) - 1945806..1945976 (-) 171 WP_010776353.1 hypothetical protein -
  OZE10_RS10005 (OZE10_10005) - 1945976..1946137 (-) 162 WP_164978496.1 hypothetical protein -
  OZE10_RS10010 (OZE10_10010) - 1946138..1946629 (-) 492 WP_078122593.1 DUF1642 domain-containing protein -
  OZE10_RS10015 (OZE10_10015) - 1946632..1946871 (-) 240 WP_074653948.1 hypothetical protein -
  OZE10_RS10020 (OZE10_10020) - 1946883..1947134 (-) 252 WP_078122594.1 hypothetical protein -
  OZE10_RS10025 (OZE10_10025) - 1947131..1947454 (-) 324 WP_089201922.1 DNA-directed RNA polymerase subunit delta -
  OZE10_RS10030 (OZE10_10030) - 1947460..1947696 (-) 237 WP_078122596.1 hypothetical protein -
  OZE10_RS10035 (OZE10_10035) - 1947711..1947935 (-) 225 WP_078122597.1 hypothetical protein -
  OZE10_RS10040 (OZE10_10040) - 1947935..1948282 (-) 348 WP_164978499.1 hypothetical protein -
  OZE10_RS10045 (OZE10_10045) - 1948692..1949174 (-) 483 WP_078122598.1 class I SAM-dependent methyltransferase -
  OZE10_RS10050 (OZE10_10050) - 1949228..1949434 (-) 207 WP_025190349.1 hypothetical protein -
  OZE10_RS10055 (OZE10_10055) - 1949454..1949783 (-) 330 WP_078122599.1 hypothetical protein -
  OZE10_RS10060 (OZE10_10060) ssb 1949795..1950322 (-) 528 WP_010776361.1 single-stranded DNA-binding protein Machinery gene
  OZE10_RS10065 (OZE10_10065) - 1950312..1950620 (-) 309 WP_002381633.1 MazG-like family protein -
  OZE10_RS10070 (OZE10_10070) - 1950620..1951633 (-) 1014 WP_048670087.1 hypothetical protein -
  OZE10_RS10075 (OZE10_10075) - 1951652..1952332 (-) 681 WP_002404926.1 putative HNHc nuclease -
  OZE10_RS10080 (OZE10_10080) - 1952329..1953267 (-) 939 WP_002404925.1 DUF1351 domain-containing protein -
  OZE10_RS10085 (OZE10_10085) - 1953252..1953929 (-) 678 WP_002404924.1 ERF family protein -
  OZE10_RS10090 (OZE10_10090) - 1953930..1954166 (-) 237 WP_002389004.1 hypothetical protein -
  OZE10_RS10095 (OZE10_10095) - 1954223..1954378 (-) 156 WP_002395694.1 hypothetical protein -
  OZE10_RS10100 (OZE10_10100) - 1954486..1954659 (-) 174 WP_002404922.1 hypothetical protein -
  OZE10_RS10105 (OZE10_10105) - 1954681..1954929 (-) 249 WP_002389279.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19345.20 Da        Isoelectric Point: 4.7078

>NTDB_id=763221 OZE10_RS10060 WP_010776361.1 1949795..1950322(-) (ssb) [Enterococcus faecalis strain T30]
MINNVVLIGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLESKSTNENRNSVQSSQNSVTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=763221 OZE10_RS10060 WP_010776361.1 1949795..1950322(-) (ssb) [Enterococcus faecalis strain T30]
ATGATAAATAATGTGGTATTAATCGGAAGGCTGACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTGTATGTGACTGAAGTTGTTTGCGAAAGCTTCCAATTATTAGAGTCAAAAAG
CACCAATGAGAATAGAAATAGCGTTCAGAGTTCGCAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGTGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.551

100

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.865

100

0.589