Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMK12_RS05020 Genome accession   NZ_CP125395
Coordinates   988016..988567 (+) Length   183 a.a.
NCBI ID   WP_002861797.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC94     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 983016..993567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK12_RS04990 (QMK12_04990) rseP 983189..984295 (+) 1107 WP_002871790.1 RIP metalloprotease RseP -
  QMK12_RS04995 (QMK12_04995) - 984288..985148 (+) 861 WP_057042828.1 VirK family antimicrobial peptide resistance protein -
  QMK12_RS05000 (QMK12_05000) - 985141..986142 (-) 1002 WP_283155393.1 TIM barrel protein -
  QMK12_RS05005 (QMK12_05005) - 986139..987412 (-) 1274 Protein_963 MFS transporter -
  QMK12_RS05015 (QMK12_05015) rpsF 987630..988007 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  QMK12_RS05020 (QMK12_05020) ssb 988016..988567 (+) 552 WP_002861797.1 single-stranded DNA-binding protein Machinery gene
  QMK12_RS05025 (QMK12_05025) rpsR 988578..988838 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  QMK12_RS05030 (QMK12_05030) lon 988899..991274 (-) 2376 WP_002866098.1 endopeptidase La -
  QMK12_RS05035 (QMK12_05035) - 991291..991938 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  QMK12_RS05040 (QMK12_05040) fliW 992099..992488 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  QMK12_RS05045 (QMK12_05045) proC 992488..993219 (+) 732 WP_002932769.1 pyrroline-5-carboxylate reductase Machinery gene
  QMK12_RS05050 (QMK12_05050) ctsT 993216..993518 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20649.56 Da        Isoelectric Point: 5.0431

>NTDB_id=763216 QMK12_RS05020 WP_002861797.1 988016..988567(+) (ssb) [Campylobacter jejuni strain SKBC94]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGGNSNAPQQGGIGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=763216 QMK12_RS05020 WP_002861797.1 988016..988567(+) (ssb) [Campylobacter jejuni strain SKBC94]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCGCAAAGCGGTAGTGCTATTGG
AGCTTCTGCTATCGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAGGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGCGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCGGCAA
TTCCAATGCTCCACAACAAGGTGGAATTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.158

100

0.372
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361