Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMK09_RS05705 Genome accession   NZ_CP125383
Coordinates   1080816..1081367 (+) Length   183 a.a.
NCBI ID   WP_002865738.1    Uniprot ID   O69302
Organism   Campylobacter jejuni strain SKBC1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1075816..1086367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK09_RS05670 (QMK09_05670) - 1076005..1076430 (+) 426 WP_002874957.1 GNAT family N-acetyltransferase -
  QMK09_RS05675 (QMK09_05675) - 1076495..1077115 (+) 621 Protein_1102 nitroreductase family protein -
  QMK09_RS05680 (QMK09_05680) - 1077115..1077720 (+) 606 WP_002874954.1 NAD(P)H-dependent oxidoreductase -
  QMK09_RS05685 (QMK09_05685) pgsA 1077845..1078381 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QMK09_RS05690 (QMK09_05690) rseP 1078378..1079484 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  QMK09_RS05695 (QMK09_05695) - 1079477..1080343 (+) 867 WP_057036689.1 VirK family antimicrobial peptide resistance protein -
  QMK09_RS05700 (QMK09_05700) rpsF 1080430..1080807 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  QMK09_RS05705 (QMK09_05705) ssb 1080816..1081367 (+) 552 WP_002865738.1 single-stranded DNA-binding protein Machinery gene
  QMK09_RS05710 (QMK09_05710) rpsR 1081378..1081638 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  QMK09_RS05715 (QMK09_05715) lon 1081699..1084074 (-) 2376 WP_002868636.1 endopeptidase La -
  QMK09_RS05720 (QMK09_05720) - 1084091..1084738 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  QMK09_RS05725 (QMK09_05725) fliW 1084899..1085288 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  QMK09_RS05730 (QMK09_05730) proC 1085288..1086019 (+) 732 WP_002868635.1 pyrroline-5-carboxylate reductase Machinery gene
  QMK09_RS05735 (QMK09_05735) ctsT 1086016..1086318 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20683.58 Da        Isoelectric Point: 5.0431

>NTDB_id=762985 QMK09_RS05705 WP_002865738.1 1080816..1081367(+) (ssb) [Campylobacter jejuni strain SKBC1]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=762985 QMK09_RS05705 WP_002865738.1 1080816..1081367(+) (ssb) [Campylobacter jejuni strain SKBC1]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O69302

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361