Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QMK42_RS13210 Genome accession   NZ_CP125365
Coordinates   2808605..2809249 (+) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain ZY36     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2803605..2814249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK42_RS13195 (QMK42_13195) - 2804239..2805453 (+) 1215 WP_003113355.1 MFS transporter -
  QMK42_RS13200 (QMK42_13200) - 2805469..2806497 (-) 1029 WP_003097554.1 AraC family transcriptional regulator -
  QMK42_RS13205 (QMK42_13205) pqsH 2807115..2808263 (+) 1149 WP_191519435.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  QMK42_RS13210 (QMK42_13210) letA 2808605..2809249 (+) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QMK42_RS13215 (QMK42_13215) uvrC 2809250..2811076 (+) 1827 WP_031755462.1 excinuclease ABC subunit UvrC -
  QMK42_RS13220 (QMK42_13220) pgsA 2811110..2811670 (+) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QMK42_RS13230 (QMK42_13230) - 2812056..2813984 (+) 1929 WP_003158602.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=762800 QMK42_RS13210 WP_003090351.1 2808605..2809249(+) (letA) [Pseudomonas aeruginosa strain ZY36]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=762800 QMK42_RS13210 WP_003090351.1 2808605..2809249(+) (letA) [Pseudomonas aeruginosa strain ZY36]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAGCTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCAACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAGCTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537