Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QMK43_RS29860 Genome accession   NZ_CP125363
Coordinates   6406008..6406604 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain ZY156     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6401008..6411604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK43_RS29840 (QMK43_29840) aroK 6402139..6402657 (-) 519 WP_003095833.1 shikimate kinase AroK -
  QMK43_RS29845 (QMK43_29845) pilQ 6402669..6404813 (-) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  QMK43_RS29850 (QMK43_29850) pilP 6404867..6405391 (-) 525 WP_223111084.1 type 4a pilus biogenesis lipoprotein PilP -
  QMK43_RS29855 (QMK43_29855) pilO 6405388..6406011 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  QMK43_RS29860 (QMK43_29860) pilN 6406008..6406604 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  QMK43_RS29865 (QMK43_29865) pilM 6406604..6407668 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  QMK43_RS29870 (QMK43_29870) - 6407853..6410324 (+) 2472 WP_031756300.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=762741 QMK43_RS29860 WP_003095839.1 6406008..6406604(-) (pilN) [Pseudomonas aeruginosa strain ZY156]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=762741 QMK43_RS29860 WP_003095839.1 6406008..6406604(-) (pilN) [Pseudomonas aeruginosa strain ZY156]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCACTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369