Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OU800_RS18800 Genome accession   NZ_CP113519
Coordinates   4250381..4251982 (-) Length   533 a.a.
NCBI ID   WP_268178862.1    Uniprot ID   -
Organism   Pseudomonas sp. GOM7     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4245381..4256982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU800_RS18780 (OU800_18780) trxB 4245827..4246774 (-) 948 WP_268178857.1 thioredoxin-disulfide reductase -
  OU800_RS18785 (OU800_18785) cysZ 4247033..4247764 (+) 732 WP_268178858.1 sulfate transporter CysZ -
  OU800_RS18790 (OU800_18790) - 4247833..4249029 (+) 1197 WP_268178859.1 glycosyltransferase family 1 protein -
  OU800_RS18795 (OU800_18795) pilR 4249038..4250378 (-) 1341 WP_268178860.1 sigma-54 dependent transcriptional regulator Regulator
  OU800_RS18800 (OU800_18800) pilS 4250381..4251982 (-) 1602 WP_268178862.1 ATP-binding protein Regulator
  OU800_RS18805 (OU800_18805) - 4251966..4252208 (-) 243 WP_268178864.1 PP0621 family protein -
  OU800_RS18810 (OU800_18810) - 4252380..4253372 (-) 993 WP_268178866.1 outer membrane protein assembly factor BamD -
  OU800_RS18815 (OU800_18815) rluD 4253512..4254486 (+) 975 WP_268178868.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OU800_RS18820 (OU800_18820) pgeF 4254483..4255214 (+) 732 WP_268178870.1 peptidoglycan editing factor PgeF -
  OU800_RS18825 (OU800_18825) - 4255367..4256476 (+) 1110 WP_268178871.1 NADH:flavin oxidoreductase -

Sequence

Protein


Download         Length: 533 a.a.        Molecular weight: 59541.92 Da        Isoelectric Point: 9.2126

>NTDB_id=762689 OU800_RS18800 WP_268178862.1 4250381..4251982(-) (pilS) [Pseudomonas sp. GOM7]
MPVIAESFAGLDSVPARRILRLYHFYRLSIGLALVLLISSKLDEQLLDLVHIELFRTGSWIYLITNIFIAVLVHKPRHML
QLFSLALVDVIFLSALFYAAGGTPSGIGNLLVVAVAIANILLRGRIGLLIAAIAALALIFTTFYLSLRYPAASSQYVQAG
ALGSLCFAGALFIQGITRRLRLSETLAEQRAADVANLEELNTQIIQRMRTGILVLDTQHRVLLANQGATQLLGQGELAGK
ILDPHCPELVKRLQQWQHNPTLRPASLQAQIDGPVLQPSFISLQRGMQQHTLVFLDDISQIAQQAQQLKLASLGRLTAGI
AHEIRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSKRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSA
PADRQLHLQTQSGSLQTRMDPQQLNQVLTNLVQNGLRYSAQKHRLGQVWLRLFRDEASDLPVLEILDDGPGVPPEQKQHI
FEPFYTTENKGTGLGLYISRELCESNQARLDYKPREEGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1602 bp        

>NTDB_id=762689 OU800_RS18800 WP_268178862.1 4250381..4251982(-) (pilS) [Pseudomonas sp. GOM7]
ATGCCGGTGATCGCTGAGAGCTTCGCAGGCCTGGACAGCGTACCGGCCCGGCGGATTCTCAGGCTTTACCATTTCTATCG
GCTGAGCATCGGCCTGGCGCTGGTGCTGCTGATTTCCAGCAAGCTCGACGAGCAGTTGCTCGATCTGGTGCATATCGAGC
TGTTTCGCACCGGTAGCTGGATCTACCTGATCACCAATATCTTCATCGCCGTGCTGGTGCACAAACCCCGGCACATGCTG
CAACTGTTCAGCCTGGCGCTGGTGGATGTGATCTTCCTCTCGGCCCTGTTCTACGCCGCCGGTGGCACGCCCAGCGGTAT
CGGCAACCTGCTGGTGGTGGCGGTGGCCATTGCCAATATCCTTCTGCGCGGCCGTATCGGTCTGCTGATCGCCGCCATCG
CCGCGCTGGCGCTGATCTTCACCACCTTCTACCTGAGTCTGCGCTACCCCGCCGCTTCGTCCCAGTACGTGCAGGCGGGG
GCCCTGGGCTCGCTGTGTTTCGCCGGCGCCCTGTTCATTCAGGGCATCACCCGGCGCCTGCGCCTGAGCGAGACCCTGGC
CGAACAGCGCGCAGCGGATGTGGCCAACCTCGAAGAGCTCAACACCCAGATCATCCAGCGCATGCGCACCGGCATCCTGG
TGCTCGATACCCAGCATCGTGTGCTGCTGGCCAATCAGGGCGCCACACAGTTGCTGGGGCAGGGCGAACTGGCCGGCAAG
ATCCTCGACCCGCATTGCCCTGAGCTGGTCAAACGCCTGCAGCAATGGCAGCACAACCCCACCCTGCGCCCGGCAAGCCT
GCAGGCCCAGATCGACGGCCCGGTGCTGCAACCCAGCTTCATCTCCTTGCAGCGCGGCATGCAGCAGCACACCCTGGTGT
TTCTCGACGATATCTCGCAGATCGCCCAGCAGGCGCAGCAACTCAAGCTGGCCTCGCTCGGGCGCCTGACCGCCGGTATT
GCCCATGAGATCCGCAACCCGCTCGGCGCCATCAGCCATGCCGCGCAATTGCTGCAGGAGTCCGAGGATCTGCAGGGGCC
GGATCAGCGTCTGGCGCAGATCATTCAGGATCATTCCAAGCGCATGAACCTGGTGATCGAGAACGTGCTGCAGCTTTCCC
GGCGGCGCCAGGCCGAGCCGCAACTGCTCGACCTCAAGTACTGGCTGCATCGCTTCGCCAGCGAGTTCCGCAGCTCGGCG
CCGGCCGACCGGCAGCTTCACCTGCAGACCCAGAGCGGCAGCCTGCAGACGCGCATGGATCCCCAACAACTGAACCAGGT
GCTGACCAACCTGGTGCAGAACGGCCTGCGCTACAGCGCGCAGAAGCACCGGCTCGGCCAGGTCTGGCTGCGCCTGTTCC
GCGACGAGGCCAGCGACCTGCCGGTGCTGGAGATACTCGATGACGGCCCAGGCGTGCCGCCCGAGCAGAAGCAACATATC
TTCGAGCCGTTCTACACCACGGAGAACAAGGGCACCGGCCTGGGCCTGTACATCTCCCGCGAGCTGTGCGAAAGCAACCA
GGCCCGCCTCGATTACAAACCCCGCGAAGAGGGCGGTAGCTGTTTCCGCATCACCTTCGCCCATCCGCGCAAACTGAGCT
GA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(420-526)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

68.726

97.186

0.668