Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OU800_RS09320 Genome accession   NZ_CP113519
Coordinates   2057684..2058316 (+) Length   210 a.a.
NCBI ID   WP_268183155.1    Uniprot ID   -
Organism   Pseudomonas sp. GOM7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2052684..2063316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU800_RS09300 (OU800_09300) lolD 2052777..2053463 (+) 687 WP_268184257.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  OU800_RS09305 (OU800_09305) - 2053463..2054707 (+) 1245 WP_268183150.1 lipoprotein-releasing ABC transporter permease subunit -
  OU800_RS09310 (OU800_09310) - 2054767..2055291 (-) 525 WP_268183152.1 DUF2062 domain-containing protein -
  OU800_RS09315 (OU800_09315) comA 2055387..2057612 (+) 2226 WP_268183153.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OU800_RS09320 (OU800_09320) exbB 2057684..2058316 (+) 633 WP_268183155.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OU800_RS09325 (OU800_09325) - 2058313..2058741 (+) 429 WP_268183157.1 biopolymer transporter ExbD -
  OU800_RS09330 (OU800_09330) lpxK 2058742..2059746 (+) 1005 WP_268183159.1 tetraacyldisaccharide 4'-kinase -
  OU800_RS09335 (OU800_09335) - 2059766..2059951 (+) 186 WP_268183161.1 Trm112 family protein -
  OU800_RS09340 (OU800_09340) kdsB 2059952..2060716 (+) 765 WP_268183163.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OU800_RS09345 (OU800_09345) - 2060716..2061180 (+) 465 WP_268183165.1 low molecular weight protein-tyrosine-phosphatase -
  OU800_RS09350 (OU800_09350) murB 2061177..2062196 (+) 1020 WP_268183167.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22882.98 Da        Isoelectric Point: 7.8833

>NTDB_id=762678 OU800_RS09320 WP_268183155.1 2057684..2058316(+) (exbB) [Pseudomonas sp. GOM7]
MWELVKAGGWMMLPIILCSIAAAGIIAERLWTLRPARVTPANLLAQVWRWIKDKKLNNQKLKELRENSPLGQILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAGIAPLLGLLGTVLGMIDIFSSFMGNGTGNAAILAGGISKALITTAS
GLFVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEMVQGDRDVDLGEDKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=762678 OU800_RS09320 WP_268183155.1 2057684..2058316(+) (exbB) [Pseudomonas sp. GOM7]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTCTGCTCCATCGCCGCTGCCGGCATCATTGC
CGAGCGTCTCTGGACCCTGCGGCCCGCCCGCGTCACCCCGGCCAATCTGCTGGCTCAGGTGTGGCGCTGGATCAAGGACA
AGAAGCTCAACAACCAGAAGCTCAAGGAACTGCGCGAGAACTCCCCGCTGGGGCAGATCCTTGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAGGAATGCATCGAAGAAGCCGCCGCTCGCGTCATCCATGAGCTGGAGCGCTACCT
CAATGCCCTTGGCACCATCGCCGGCATCGCCCCGCTGCTCGGCCTGCTTGGCACCGTGCTGGGCATGATCGACATTTTCA
GCTCCTTCATGGGCAATGGCACCGGCAATGCAGCGATCCTCGCCGGCGGTATCTCCAAGGCGCTGATCACCACGGCCTCG
GGTCTGTTCGTGGCGATCCCGGCGCTGTTCTTCCACCGTTATCTGCAGCGCCGCGTCGACGAGCTGGTGGTGGGCATGGA
GCAGGAGGCGATCAAGCTGGTGGAAATGGTGCAGGGTGATCGCGACGTCGACCTGGGCGAGGACAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.238

100

0.852