Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   OU809_RS13240 Genome accession   NZ_CP113516
Coordinates   2670199..2670534 (+) Length   111 a.a.
NCBI ID   WP_023855185.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain 285-3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2665199..2675534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU809_RS13220 (OU809_13220) gcvT 2665629..2666723 (-) 1095 WP_023855182.1 glycine cleavage system aminomethyltransferase GcvT -
  OU809_RS13225 (OU809_13225) - 2667318..2668997 (+) 1680 WP_020452163.1 DEAD/DEAH box helicase -
  OU809_RS13230 (OU809_13230) - 2669004..2669798 (+) 795 WP_020452164.1 YqhG family protein -
  OU809_RS13235 (OU809_13235) sinI 2669989..2670165 (+) 177 WP_023855184.1 anti-repressor SinI Regulator
  OU809_RS13240 (OU809_13240) sinR 2670199..2670534 (+) 336 WP_023855185.1 transcriptional regulator SinR Regulator
  OU809_RS13245 (OU809_13245) tasA 2670639..2671433 (-) 795 WP_020452167.1 biofilm matrix protein TasA -
  OU809_RS13250 (OU809_13250) sipW 2671506..2672090 (-) 585 WP_020452168.1 signal peptidase I SipW -
  OU809_RS13255 (OU809_13255) tapA 2672087..2672815 (-) 729 WP_268050583.1 amyloid fiber anchoring/assembly protein TapA -
  OU809_RS13260 (OU809_13260) - 2673093..2673413 (+) 321 WP_023855188.1 YqzG/YhdC family protein -
  OU809_RS13265 (OU809_13265) - 2673443..2673625 (-) 183 WP_020452171.1 YqzE family protein -
  OU809_RS13270 (OU809_13270) comGG 2673714..2674079 (-) 366 WP_025811163.1 competence type IV pilus minor pilin ComGG -
  OU809_RS13275 (OU809_13275) comGF 2674091..2674579 (-) 489 WP_224067282.1 competence type IV pilus minor pilin ComGF -
  OU809_RS13280 (OU809_13280) comGE 2674488..2674835 (-) 348 WP_023855191.1 competence type IV pilus minor pilin ComGE -
  OU809_RS13285 (OU809_13285) comGD 2674819..2675256 (-) 438 WP_039072845.1 competence type IV pilus minor pilin ComGD -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12962.60 Da        Isoelectric Point: 7.0171

>NTDB_id=762609 OU809_RS13240 WP_023855185.1 2670199..2670534(+) (sinR) [Bacillus paralicheniformis strain 285-3]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=762609 OU809_RS13240 WP_023855185.1 2670199..2670534(+) (sinR) [Bacillus paralicheniformis strain 285-3]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928