Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   OVA33_RS07330 Genome accession   NZ_CP113515
Coordinates   1431938..1432627 (+) Length   229 a.a.
NCBI ID   WP_199803302.1    Uniprot ID   -
Organism   Bacillus sp. KICET-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1426938..1437627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OVA33_RS07305 (OVA33_07310) degS 1427222..1428385 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  OVA33_RS07310 (OVA33_07315) degU 1428462..1429151 (+) 690 WP_270777843.1 two-component system response regulator DegU Regulator
  OVA33_RS07315 (OVA33_07320) - 1429249..1430097 (+) 849 WP_003151387.1 DegV family protein -
  OVA33_RS07320 (OVA33_07325) comFA 1430205..1431590 (+) 1386 WP_063636495.1 DEAD/DEAH box helicase Machinery gene
  OVA33_RS07325 (OVA33_07330) - 1431648..1431932 (+) 285 WP_022553866.1 competence protein ComFB -
  OVA33_RS07330 (OVA33_07335) comFC 1431938..1432627 (+) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  OVA33_RS07335 (OVA33_07340) - 1432701..1433120 (+) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  OVA33_RS07340 (OVA33_07345) flgM 1433190..1433456 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  OVA33_RS07345 (OVA33_07350) - 1433471..1433953 (+) 483 WP_022553865.1 flagellar protein FlgN -
  OVA33_RS07350 (OVA33_07355) flgK 1433969..1435486 (+) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  OVA33_RS07355 (OVA33_07360) flgL 1435498..1436415 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  OVA33_RS07360 (OVA33_07365) - 1436506..1437075 (+) 570 WP_017418818.1 DUF6470 family protein -
  OVA33_RS07365 (OVA33_07370) fliW 1437105..1437536 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25332.01 Da        Isoelectric Point: 8.2927

>NTDB_id=762515 OVA33_RS07330 WP_199803302.1 1431938..1432627(+) (comFC) [Bacillus sp. KICET-1]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=762515 OVA33_RS07330 WP_199803302.1 1431938..1432627(+) (comFC) [Bacillus sp. KICET-1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGTCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594