Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   OVA33_RS07310 Genome accession   NZ_CP113515
Coordinates   1428462..1429151 (+) Length   229 a.a.
NCBI ID   WP_270777843.1    Uniprot ID   -
Organism   Bacillus sp. KICET-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1423462..1434151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OVA33_RS07290 (OVA33_07295) - 1423978..1425054 (+) 1077 WP_003151382.1 MraY family glycosyltransferase -
  OVA33_RS07295 (OVA33_07300) - 1425154..1426347 (-) 1194 WP_128974134.1 LCP family protein -
  OVA33_RS07300 (OVA33_07305) - 1426352..1426999 (-) 648 WP_060657503.1 YigZ family protein -
  OVA33_RS07305 (OVA33_07310) degS 1427222..1428385 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  OVA33_RS07310 (OVA33_07315) degU 1428462..1429151 (+) 690 WP_270777843.1 two-component system response regulator DegU Regulator
  OVA33_RS07315 (OVA33_07320) - 1429249..1430097 (+) 849 WP_003151387.1 DegV family protein -
  OVA33_RS07320 (OVA33_07325) comFA 1430205..1431590 (+) 1386 WP_063636495.1 DEAD/DEAH box helicase Machinery gene
  OVA33_RS07325 (OVA33_07330) - 1431648..1431932 (+) 285 WP_022553866.1 competence protein ComFB -
  OVA33_RS07330 (OVA33_07335) comFC 1431938..1432627 (+) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  OVA33_RS07335 (OVA33_07340) - 1432701..1433120 (+) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  OVA33_RS07340 (OVA33_07345) flgM 1433190..1433456 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  OVA33_RS07345 (OVA33_07350) - 1433471..1433953 (+) 483 WP_022553865.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25894.62 Da        Isoelectric Point: 5.9446

>NTDB_id=762513 OVA33_RS07310 WP_270777843.1 1428462..1429151(+) (degU) [Bacillus sp. KICET-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVVIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=762513 OVA33_RS07310 WP_270777843.1 1428462..1429151(+) (degU) [Bacillus sp. KICET-1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCATGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGTA
CACAAGCCGTTGTCGTGGTCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-219)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996