Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   OPT60_RS08510 Genome accession   NZ_CP125359
Coordinates   1728571..1729605 (-) Length   344 a.a.
NCBI ID   WP_084916754.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_10236     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1723571..1734605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT60_RS08475 (OPT60_08475) - 1724196..1724498 (-) 303 WP_003052320.1 YlxQ-related RNA-binding protein -
  OPT60_RS08480 (OPT60_08480) - 1724491..1724787 (-) 297 WP_003062190.1 YlxR family protein -
  OPT60_RS08485 (OPT60_08485) nusA 1724803..1725960 (-) 1158 WP_003057051.1 transcription termination factor NusA -
  OPT60_RS08490 (OPT60_08490) rimP 1726103..1726597 (-) 495 WP_044022604.1 ribosome maturation factor RimP -
  OPT60_RS08500 (OPT60_08500) trmB 1727080..1727715 (-) 636 WP_003052470.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  OPT60_RS08505 (OPT60_08505) - 1727715..1728506 (-) 792 WP_003052472.1 phosphotransferase family protein -
  OPT60_RS08510 (OPT60_08510) pptB 1728571..1729605 (-) 1035 WP_084916754.1 ABC transporter permease Regulator
  OPT60_RS08515 (OPT60_08515) pptA 1729608..1730333 (-) 726 WP_012767492.1 ABC transporter ATP-binding protein Regulator
  OPT60_RS08520 (OPT60_08520) - 1730405..1730824 (+) 420 WP_012767493.1 HIT family protein -
  OPT60_RS08525 (OPT60_08525) - 1730821..1731150 (+) 330 WP_003057072.1 hypothetical protein -
  OPT60_RS08530 (OPT60_08530) - 1731308..1732576 (-) 1269 WP_041789135.1 LCP family protein -
  OPT60_RS08535 (OPT60_08535) - 1732588..1733109 (-) 522 WP_003057063.1 GNAT family N-acetyltransferase -
  OPT60_RS08540 (OPT60_08540) tsaE 1733102..1733545 (-) 444 WP_065361353.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40222.47 Da        Isoelectric Point: 10.2928

>NTDB_id=762425 OPT60_RS08510 WP_084916754.1 1728571..1729605(-) (pptB) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
MKALFLKRRRDFQKQQSKYLRYVFNDHFVLVLMFLFGFCLVQYSQLLKHFPSNHWPIWLFLMVGMLLLLHLGSVATYLEE
PDHHFLLPKEEAVVAHIKQAERSALVIWGCLQTAILIFLYPIFNRLGFSLVTFALLLLGLLALKRLLLGYKVRHFLKKDG
LDWEKAIAFESNRKQAILKFYSLFTNVKGISTKVKKRSYLNPLLKLVKENSKHLWLTLYLKAFLRSSDYLGLFLRLLLLS
SLALLFISNAYLSVALALVFNYLILFQLLSLYHHYDYHYMTSLYPENHQGKRANLLTFLRGLSCLILVINLLLCHSLEKA
LILVAVMGVITLFYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=762425 OPT60_RS08510 WP_084916754.1 1728571..1729605(-) (pptB) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
ATGAAAGCATTATTTCTGAAACGCCGTCGAGACTTTCAAAAACAACAGAGCAAATACCTGCGCTATGTCTTTAATGACCA
TTTTGTCTTGGTCCTGATGTTTTTGTTTGGTTTTTGCTTGGTGCAATACAGCCAGTTATTGAAGCATTTTCCTAGTAATC
ATTGGCCTATATGGCTCTTTCTCATGGTGGGGATGCTGTTATTGCTTCACTTGGGCTCGGTGGCAACTTATTTAGAAGAG
CCTGATCACCATTTTCTACTTCCGAAAGAAGAAGCTGTGGTTGCTCATATTAAACAAGCTGAACGCTCTGCCCTTGTAAT
TTGGGGCTGTTTACAGACAGCTATCCTCATCTTTTTATATCCGATCTTCAATCGCCTAGGCTTCTCCTTAGTTACTTTTG
CTCTTTTACTTTTGGGATTACTAGCTCTTAAACGACTCCTTTTGGGGTATAAAGTAAGACACTTTTTAAAGAAAGATGGA
CTGGATTGGGAAAAAGCCATTGCTTTTGAGAGTAATCGTAAACAGGCTATCTTAAAGTTTTATTCTCTTTTCACAAATGT
TAAGGGAATTTCCACAAAGGTTAAGAAAAGATCTTATTTAAATCCTCTTCTAAAATTGGTAAAAGAAAATAGTAAGCACC
TCTGGCTAACGCTCTATTTAAAAGCTTTTTTACGAAGTTCAGACTATTTAGGACTCTTTTTACGCTTATTATTATTGAGT
TCCCTAGCCTTGCTGTTTATTTCTAACGCTTACCTATCAGTGGCTTTAGCCTTGGTCTTTAATTATTTGATTCTTTTTCA
ATTGTTGTCTCTTTACCACCATTACGATTACCACTACATGACTAGTCTTTATCCAGAGAATCATCAAGGGAAGCGGGCGA
ATCTATTGACTTTTTTGAGAGGATTAAGTTGTCTGATATTAGTTATCAACCTCCTGCTCTGCCATTCTTTAGAAAAAGCC
CTTATTTTAGTAGCGGTCATGGGAGTTATTACGCTTTTCTACCTCCCTTATAAGTTGAAGAAGATAATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(156-327)

Bacterial ABC transporter protein EcsB (EcsB)

(2-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

47.093

100

0.471
  pptB Streptococcus salivarius strain HSISS4

46.512

100

0.465