Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OPT60_RS07225 Genome accession   NZ_CP125359
Coordinates   1460242..1460838 (-) Length   198 a.a.
NCBI ID   WP_003057983.1    Uniprot ID   A0A9X9SJD2
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_10236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1455242..1465838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT60_RS07210 (OPT60_07210) - 1456652..1457347 (-) 696 WP_003057977.1 TIGR02206 family membrane protein -
  OPT60_RS07215 (OPT60_07215) murF 1457451..1458818 (-) 1368 WP_014612439.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  OPT60_RS07220 (OPT60_07220) - 1459024..1460070 (-) 1047 WP_003060500.1 D-alanine--D-alanine ligase -
  OPT60_RS07225 (OPT60_07225) recR 1460242..1460838 (-) 597 WP_003057983.1 recombination mediator RecR Machinery gene
  OPT60_RS07230 (OPT60_07230) pbp2b 1460850..1462904 (-) 2055 WP_046166022.1 penicillin-binding protein PBP2B -
  OPT60_RS07235 (OPT60_07235) - 1463011..1463781 (-) 771 WP_003051604.1 formate/nitrite transporter family protein -
  OPT60_RS07240 (OPT60_07240) - 1463908..1464450 (-) 543 WP_084916487.1 hypothetical protein -
  OPT60_RS07245 (OPT60_07245) - 1464552..1465073 (-) 522 WP_003051609.1 transcription repressor NadR -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21643.75 Da        Isoelectric Point: 4.6595

>NTDB_id=762413 OPT60_RS07225 WP_003057983.1 1460242..1460838(-) (recR) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
MFYPTPIAKLIESYSKLPGIGVKTATRLAFYTIGMSDEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCSICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=762413 OPT60_RS07225 WP_003057983.1 1460242..1460838(-) (recR) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
GTGTTTTACCCAACCCCTATTGCAAAATTAATCGAAAGTTATTCCAAGCTCCCAGGAATTGGGGTAAAAACGGCAACTAG
ACTTGCCTTTTACACAATTGGAATGTCTGACGAGGATGTCAATGACTTTGCTAAAAATTTATTGGCAGCTAAAAGAGAAT
TAACCTATTGTTCCATTTGTGGCAACCTGACAGATGATGATCCTTGTTCTATCTGCACAGATACAAGTCGTGACCAGACA
ACGATTCTTGTGGTGGAAGATGCTAAAGATGTTTCTGCTATGGAAAAAATTCAAGAGTATCATGGTTATTACCATGTGCT
GCATGGTTTAATTTCACCGATGAATGGTGTTGGTCCGGATGATATCAATCTAAAAAGTTTAATTACTCGTTTAATGGACG
GTAAAGTGACTGAAGTTATCGTAGCGACCAATGCCACAGCTGATGGCGAAGCAACATCTATGTATATCTCACGGGTCTTG
AAACCAGCAGGAATCAAAGTTACCCGCTTAGCAAGAGGGCTCGCAGTGGGGTCAGATATTGAATACGCAGATGAAGTCAC
CTTGTTAAGAGCTATTGAAAACCGCACAGAACTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X9SJD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.769

98.485

0.5