Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   OPT60_RS05965 Genome accession   NZ_CP125359
Coordinates   1182435..1184219 (-) Length   594 a.a.
NCBI ID   WP_015017082.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_10236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1177435..1189219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT60_RS05950 (OPT60_05950) pepV 1178222..1179631 (-) 1410 WP_084916774.1 dipeptidase PepV -
  OPT60_RS05955 (OPT60_05955) - 1179809..1180411 (-) 603 WP_003054310.1 nitroreductase family protein -
  OPT60_RS05960 (OPT60_05960) - 1180724..1182373 (+) 1650 Protein_1118 thiamine pyrophosphate-dependent enzyme -
  OPT60_RS05965 (OPT60_05965) uvrC 1182435..1184219 (-) 1785 WP_015017082.1 excinuclease ABC subunit UvrC Machinery gene
  OPT60_RS05970 (OPT60_05970) - 1184349..1184498 (-) 150 WP_003054304.1 hypothetical protein -
  OPT60_RS05975 (OPT60_05975) - 1184554..1185930 (-) 1377 WP_049519354.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  OPT60_RS05980 (OPT60_05980) - 1186008..1186715 (-) 708 WP_015017084.1 YjjG family noncanonical pyrimidine nucleotidase -
  OPT60_RS05985 (OPT60_05985) - 1186763..1187434 (-) 672 WP_015017085.1 DUF1524 domain-containing protein -
  OPT60_RS05990 (OPT60_05990) - 1187652..1188218 (-) 567 WP_003058443.1 sugar O-acetyltransferase -
  OPT60_RS05995 (OPT60_05995) - 1188234..1188908 (-) 675 WP_003058422.1 HAD family phosphatase -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 67994.69 Da        Isoelectric Point: 9.4030

>NTDB_id=762404 OPT60_RS05965 WP_015017082.1 1182435..1184219(-) (uvrC) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
MNELIKHKLELLPDSPGCYLHKDKEGTIIYVGKAKNLKNRVRSYFRGSHDTKTELLVSEIADFEFIVTESNTEALLLEIN
LIQENMPKYNIKLKDDKSYPFIKITNETFPRLLITRQIKKNDGLYFGPYPDSYTANEVKKLLDRIFPFKKCKNPVNKVCF
YYHLGQCCAHTICHTGKAYWDGLVEDVKHFLNGKDDKIIDGLRAKMLAASEEMAFERAAEYRDLISGIAIMRTKQRVMSK
DLQDRDIFGYFVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNEAEEDFLTYMGQFYQDKQHFIPKEVFIPEAIDEELVAAI
VPTKIIKPQRGEKKQLVALATKNARVSLQQKFDLLEKDIKKTSGAIDNLGYLLGIDKPVRIEAFDNSNIQGTSPVAAMVV
FVDGKPSKKDYRKFKIKTVVGPDDYASMREVIFRRYSRVKHEGLVAPDLIIIDGGLGQVNAAREVIEDRLGLTIPIAGLQ
KNDKHQTHELLFGKPLEVVPLPRNSEEFFLLHRIQDEVHRFAITFHRQVRSKNSFSSKLDKIPGLGPKRKQILLKHFKTM
TAIAAASPDEIHSLGIPRAVASAVHQHLTDSQQS

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=762404 OPT60_RS05965 WP_015017082.1 1182435..1184219(-) (uvrC) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
ATGAATGAACTGATTAAACACAAGCTAGAACTCTTGCCAGATAGTCCTGGTTGTTACTTACATAAGGACAAAGAGGGAAC
CATTATCTATGTAGGTAAAGCTAAGAATTTGAAGAACCGAGTGCGATCTTATTTTCGTGGTAGCCATGATACTAAGACAG
AATTATTGGTGTCTGAGATTGCTGATTTTGAATTTATTGTGACCGAATCAAATACTGAGGCTCTCTTGCTTGAAATCAAC
TTGATTCAAGAAAACATGCCCAAGTATAATATCAAGCTCAAAGATGACAAGTCTTATCCTTTTATCAAAATCACCAATGA
GACCTTTCCTCGCTTGCTTATTACGAGACAGATTAAGAAAAATGACGGTCTATATTTCGGGCCCTATCCAGATTCGTACA
CCGCTAACGAAGTGAAAAAATTGCTGGATCGCATTTTTCCCTTTAAGAAATGTAAAAACCCTGTCAATAAGGTCTGTTTT
TATTACCATTTAGGACAGTGTTGTGCTCATACTATCTGCCATACAGGTAAGGCTTATTGGGATGGTCTGGTAGAGGATGT
CAAACACTTTTTGAATGGTAAGGATGACAAGATTATTGATGGGCTGCGGGCAAAAATGTTAGCAGCTTCTGAAGAAATGG
CATTTGAACGTGCCGCTGAATATCGAGATTTGATTTCAGGTATTGCCATCATGCGCACCAAGCAGCGGGTGATGAGTAAG
GACTTGCAAGACAGAGATATTTTTGGCTACTTTGTTGACAAGGGCTGGATGTGCGTACAGGTTTTCTTTGTCCGTCAAGG
GAAATTAATTCAGCGGGATGTTAACCTTTTTCCTTACTATAACGAGGCAGAAGAAGATTTTTTAACCTATATGGGGCAGT
TTTATCAAGATAAACAGCATTTTATCCCCAAAGAAGTCTTTATTCCAGAAGCTATTGACGAAGAACTAGTAGCGGCCATT
GTGCCAACTAAAATCATCAAGCCTCAACGGGGTGAGAAAAAACAATTGGTGGCTTTGGCGACCAAGAATGCACGTGTTAG
CCTTCAGCAGAAATTTGATTTGTTGGAAAAAGATATTAAGAAAACTAGCGGTGCCATTGACAATCTAGGCTACTTGTTAG
GAATTGACAAGCCAGTCCGGATTGAGGCTTTTGATAATTCCAATATTCAAGGGACAAGCCCCGTAGCGGCTATGGTTGTT
TTTGTTGACGGGAAACCTAGTAAGAAAGATTATCGTAAATTTAAGATTAAAACAGTGGTGGGCCCAGATGATTATGCCAG
CATGAGGGAAGTGATTTTTCGAAGGTATAGCCGCGTTAAACATGAAGGACTGGTAGCTCCTGATTTAATCATCATTGATG
GTGGGCTAGGGCAGGTCAATGCGGCCAGAGAAGTGATTGAAGACCGACTAGGTTTAACGATTCCTATTGCGGGTTTGCAA
AAAAATGATAAGCACCAGACCCATGAATTGCTCTTTGGAAAGCCACTCGAGGTAGTCCCCTTACCCCGTAATTCAGAAGA
ATTTTTCCTCTTGCATCGCATCCAAGATGAGGTGCACCGCTTTGCGATTACTTTCCACCGACAGGTTCGCAGTAAAAATT
CATTCTCTTCGAAATTGGATAAGATTCCAGGACTAGGTCCGAAGCGCAAGCAGATACTGCTTAAACATTTTAAAACCATG
ACAGCCATTGCAGCAGCTAGTCCAGATGAGATTCATTCGTTAGGGATTCCTAGGGCGGTGGCATCAGCTGTCCATCAGCA
TCTGACAGACAGTCAGCAAAGTTAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

UvrB/uvrC motif (UVR)

(196-227)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

75.722

99.158

0.751
  uvrC Streptococcus pneumoniae R6

75.382

99.158

0.747
  uvrC Streptococcus pneumoniae D39

75.382

99.158

0.747