Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   OQH41_RS16475 Genome accession   NZ_CP113442
Coordinates   3473917..3474657 (-) Length   246 a.a.
NCBI ID   WP_000081156.1    Uniprot ID   A0A009SCU3
Organism   Acinetobacter baumannii strain C9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3468917..3479657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQH41_RS16455 (OQH41_16455) aroB 3469459..3470541 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  OQH41_RS16460 (OQH41_16460) aroK 3470570..3471139 (-) 570 WP_000643712.1 shikimate kinase AroK -
  OQH41_RS16465 (OQH41_16465) pilQ 3471151..3473316 (-) 2166 WP_002062175.1 type IV pilus secretin PilQ family protein Machinery gene
  OQH41_RS16470 (OQH41_16470) pilP 3473379..3473906 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  OQH41_RS16475 (OQH41_16475) pilO 3473917..3474657 (-) 741 WP_000081156.1 type 4a pilus biogenesis protein PilO Machinery gene
  OQH41_RS16480 (OQH41_16480) pilN 3474654..3475295 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  OQH41_RS16485 (OQH41_16485) pilM 3475295..3476353 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  OQH41_RS16490 (OQH41_16490) ponA 3476516..3479071 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27818.60 Da        Isoelectric Point: 4.9608

>NTDB_id=762362 OQH41_RS16475 WP_000081156.1 3473917..3474657(-) (pilO) [Acinetobacter baumannii strain C9]
MSQNELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=762362 OQH41_RS16475 WP_000081156.1 3473917..3474657(-) (pilO) [Acinetobacter baumannii strain C9]
ATGAGTCAAAACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009SCU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679