Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   QL281_RS20710 Genome accession   NZ_CP125292
Coordinates   3876966..3877991 (+) Length   341 a.a.
NCBI ID   WP_014476730.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117797     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3871966..3882991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS20675 (QL281_20675) ylbE 3872266..3872505 (+) 240 WP_003232231.1 YlbE-like family protein -
  QL281_RS20680 (QL281_20680) ylbF 3872621..3873070 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  QL281_RS20685 (QL281_20685) ylbG 3873125..3873397 (+) 273 WP_015715839.1 YlbG family protein -
  QL281_RS20690 (QL281_20690) rsmD 3873720..3874274 (+) 555 WP_017694816.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QL281_RS20695 (QL281_20695) coaD 3874279..3874764 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  QL281_RS20700 (QL281_20700) spoVV 3874775..3876001 (-) 1227 WP_041335868.1 dipicolinic acid transporter SpoVV -
  QL281_RS20705 (QL281_20705) ylbK 3876182..3876964 (+) 783 WP_017694818.1 patatin family protein -
  QL281_RS20710 (QL281_20710) sepM 3876966..3877991 (+) 1026 WP_014476730.1 protease DdcP Regulator
  QL281_RS20715 (QL281_20715) ylbM 3878008..3879255 (-) 1248 WP_003244707.1 nucleotidyltransferase -
  QL281_RS20720 (QL281_20720) - 3879252..3879437 (-) 186 WP_003232215.1 hypothetical protein -
  QL281_RS20725 (QL281_20725) ylbN 3879465..3879983 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  QL281_RS20730 (QL281_20730) rpmF 3880005..3880184 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  QL281_RS20735 (QL281_20735) gerR 3880330..3880911 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  QL281_RS20740 (QL281_20740) ylbP 3880968..3881450 (-) 483 WP_014476736.1 N-acetyltransferase -
  QL281_RS20745 (QL281_20745) - 3881610..3882506 (+) 897 WP_041335874.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37652.22 Da        Isoelectric Point: 5.9932

>NTDB_id=762332 QL281_RS20710 WP_014476730.1 3876966..3877991(+) (sepM) [Bacillus subtilis strain SRCM117797]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSDMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=762332 QL281_RS20710 WP_014476730.1 3876966..3877991(+) (sepM) [Bacillus subtilis strain SRCM117797]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGTTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAGATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(59-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402