Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   QL281_RS20680 Genome accession   NZ_CP125292
Coordinates   3872621..3873070 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SRCM117797     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3867621..3878070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS20640 (QL281_20640) ctaE 3867638..3868261 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  QL281_RS20645 (QL281_20645) ctaF 3868264..3868596 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  QL281_RS20650 (QL281_20650) ctaG 3868624..3869517 (+) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  QL281_RS20655 (QL281_20655) ylbA 3869549..3869911 (-) 363 WP_014479712.1 YugN family protein -
  QL281_RS20660 (QL281_20660) ylbB 3870051..3870497 (+) 447 WP_003221362.1 CBS domain-containing protein -
  QL281_RS20665 (QL281_20665) ylbC 3870581..3871621 (+) 1041 WP_041335865.1 CAP domain-containing protein -
  QL281_RS20670 (QL281_20670) ylbD 3871852..3872250 (+) 399 WP_003232233.1 YlbD family protein -
  QL281_RS20675 (QL281_20675) ylbE 3872266..3872505 (+) 240 WP_003232231.1 YlbE-like family protein -
  QL281_RS20680 (QL281_20680) ylbF 3872621..3873070 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  QL281_RS20685 (QL281_20685) ylbG 3873125..3873397 (+) 273 WP_015715839.1 YlbG family protein -
  QL281_RS20690 (QL281_20690) rsmD 3873720..3874274 (+) 555 WP_017694816.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QL281_RS20695 (QL281_20695) coaD 3874279..3874764 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  QL281_RS20700 (QL281_20700) spoVV 3874775..3876001 (-) 1227 WP_041335868.1 dipicolinic acid transporter SpoVV -
  QL281_RS20705 (QL281_20705) ylbK 3876182..3876964 (+) 783 WP_017694818.1 patatin family protein -
  QL281_RS20710 (QL281_20710) sepM 3876966..3877991 (+) 1026 WP_014476730.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=762331 QL281_RS20680 WP_003221370.1 3872621..3873070(+) (ylbF) [Bacillus subtilis strain SRCM117797]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=762331 QL281_RS20680 WP_003221370.1 3872621..3873070(+) (ylbF) [Bacillus subtilis strain SRCM117797]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTCTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1