Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   OQG81_RS06605 Genome accession   NZ_CP113440
Coordinates   1240838..1242067 (-) Length   409 a.a.
NCBI ID   WP_012962047.1    Uniprot ID   -
Organism   Streptococcus macedonicus strain E37     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1235838..1247067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQG81_RS06580 (OQG81_06580) - 1236132..1236779 (+) 648 Protein_1235 endonuclease III domain-containing protein -
  OQG81_RS06585 (OQG81_06585) - 1236888..1237555 (+) 668 Protein_1236 YoaK family protein -
  OQG81_RS06590 (OQG81_06590) mmuM 1237599..1238546 (-) 948 WP_014294682.1 homocysteine S-methyltransferase -
  OQG81_RS06595 (OQG81_06595) - 1238559..1239935 (-) 1377 WP_014294683.1 amino acid permease -
  OQG81_RS06600 (OQG81_06600) yihA 1240234..1240827 (-) 594 WP_265644098.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  OQG81_RS06605 (OQG81_06605) clpX 1240838..1242067 (-) 1230 WP_012962047.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OQG81_RS06610 (OQG81_06610) - 1242100..1242270 (-) 171 WP_003065196.1 hypothetical protein -
  OQG81_RS06615 (OQG81_06615) - 1242287..1242781 (-) 495 WP_014294685.1 dihydrofolate reductase -
  OQG81_RS06620 (OQG81_06620) - 1242869..1243708 (-) 840 WP_014294686.1 thymidylate synthase -
  OQG81_RS06625 (OQG81_06625) - 1244030..1245208 (+) 1179 WP_014294687.1 hydroxymethylglutaryl-CoA synthase -
  OQG81_RS06630 (OQG81_06630) - 1245183..1246466 (+) 1284 WP_195185294.1 hydroxymethylglutaryl-CoA reductase, degradative -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45154.77 Da        Isoelectric Point: 4.5644

>NTDB_id=762298 OQG81_RS06605 WP_012962047.1 1240838..1242067(-) (clpX) [Streptococcus macedonicus strain E37]
MVGNRTNDVKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLAEVPKPKELLATLDEYVVGQDR
AKRALAVAVYNHYKRVSFAESRNEEDVDLQKSNILMIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNNRKIDENASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLTADDLVRI
LTEPRNALVKQYQTLLSYDGVELEFDKDALQAIANKAIERKTGARGLRSIIEETMMDIMFEIPSQEEVTKVRITKAAVEG
KDKPILEIA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=762298 OQG81_RS06605 WP_012962047.1 1240838..1242067(-) (clpX) [Streptococcus macedonicus strain E37]
ATGGTTGGAAATCGAACAAATGATGTAAAAGTTTATTGCTCATTCTGTGGAAAAAGCCAAGATGAAGTGAAAAAAATCAT
TGCAGGAAACAATGTTTTTATCTGTAATGAGTGCGTGGCTTTATCACAAGAAATTATCAAAGAAGAACTTGCTGAGGAAG
TTCTTGCAGATTTAGCGGAAGTTCCAAAACCTAAAGAGTTGTTAGCAACTCTTGACGAATATGTCGTTGGTCAAGACCGT
GCCAAACGCGCGCTTGCCGTAGCTGTTTATAACCATTACAAACGTGTTTCTTTTGCGGAAAGTCGCAATGAAGAAGATGT
TGATTTGCAAAAATCAAACATTTTGATGATTGGTCCTACAGGTTCAGGAAAAACATTCCTAGCTCAAACTTTGGCTAAAA
CATTGAATGTACCGTTTGCAATTGCTGATGCGACATCATTGACAGAAGCAGGATACGTTGGTGAAGATGTTGAAAATATC
CTCTTGAAATTAATTCAAGCAGCTGATTTTAATATCGAACGCGCCGAACGCGGTATCATTTACGTGGATGAAATTGATAA
AATCGCTAAAAAAGGTGAAAATGTCTCAATTACACGTGATGTTTCAGGTGAAGGTGTTCAACAAGCACTTCTTAAAATCA
TTGAAGGAACCGTTGCTAGCGTACCACCTCAAGGCGGACGTAAGCACCCTAACCAAGAAATGATTCAAATTGATACTAAA
AATATCTTATTCATTGTCGGCGGTGCTTTTGATGGTATCGAAGATATTGTCAAACAACGTTTAGGTGAAAAGGTTATCGG
TTTTGGTCAAAATAACCGTAAAATTGATGAAAATGCTTCTTATATGCAAGAAATCATTTCAGAAGACATTCAAAAATTTG
GCTTGATTCCAGAGTTTATCGGACGTTTGCCAGTTGTAGCAGCACTTGAACAGTTGACGGCTGATGATTTGGTTCGTATC
TTGACAGAACCACGTAATGCCTTGGTTAAACAATATCAAACGCTATTATCATACGACGGTGTTGAACTAGAATTTGATAA
AGATGCTTTGCAAGCTATTGCTAACAAAGCCATTGAACGTAAGACAGGAGCTCGTGGTTTACGCTCAATTATTGAAGAAA
CTATGATGGATATCATGTTTGAAATTCCTAGCCAAGAAGAAGTGACTAAGGTTCGTATCACTAAAGCGGCTGTTGAAGGC
AAAGACAAACCAATTTTGGAAATTGCGTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-391)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.976

100

0.9
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.603

98.044

0.575