Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   OXA86_RS11500 Genome accession   NZ_CP113439
Coordinates   2573087..2573791 (+) Length   234 a.a.
NCBI ID   WP_370695942.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC002     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2568087..2578791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA86_RS11475 (OXA86_11475) - 2569318..2570196 (+) 879 WP_014842287.1 lpg2327 family Dot/Icm T4SS effector -
  OXA86_RS11480 (OXA86_11480) lem22 2570461..2570844 (+) 384 WP_014842288.1 Dot/Icm T4SS effector Lem22 -
  OXA86_RS11485 (OXA86_11485) - 2571038..2571268 (+) 231 WP_011947173.1 exodeoxyribonuclease VII small subunit -
  OXA86_RS11490 (OXA86_11490) - 2571249..2572145 (+) 897 WP_027220505.1 polyprenyl synthetase family protein -
  OXA86_RS11495 (OXA86_11495) bioC 2572189..2573043 (-) 855 WP_014842290.1 malonyl-ACP O-methyltransferase BioC -
  OXA86_RS11500 (OXA86_11500) comFC 2573087..2573791 (+) 705 WP_370695942.1 ComF family protein Machinery gene
  OXA86_RS11505 (OXA86_11505) - 2573820..2574893 (-) 1074 WP_011947177.1 M50 family metallopeptidase -
  OXA86_RS11510 (OXA86_11510) - 2574950..2575228 (-) 279 WP_010948040.1 hypothetical protein -
  OXA86_RS11515 (OXA86_11515) - 2575267..2575422 (+) 156 WP_172407379.1 hypothetical protein -
  OXA86_RS11520 (OXA86_11520) hemA 2575546..2576820 (+) 1275 WP_027220506.1 glutamyl-tRNA reductase -
  OXA86_RS11525 (OXA86_11525) prfA 2576804..2577892 (+) 1089 WP_010948042.1 peptide chain release factor 1 -
  OXA86_RS11530 (OXA86_11530) prmC 2577885..2578748 (+) 864 WP_014842294.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26783.35 Da        Isoelectric Point: 9.1564

>NTDB_id=762252 OXA86_RS11500 WP_370695942.1 2573087..2573791(+) (comFC) [Legionella pneumophila strain PATHC002]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCMEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLDALPKSALKPDCLIPVPMHPKRLKRRGFNQAAVLTRLLARQLNIPYDLYYCQ
KIINTASQANLDGEQRRKNLRHAFYVSPVTYEHVMIVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARTVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=762252 OXA86_RS11500 WP_370695942.1 2573087..2573791(+) (comFC) [Legionella pneumophila strain PATHC002]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTCCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATGGAGTTTATGAAACAGCTTGGATCTTGCTGTCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGTCAATGCGTTAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCGTATCGTTTT
GAAGAACCTCTGCGTAGTTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACT
TCTTGATGCCTTACCCAAAAGCGCATTGAAACCAGATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAA
GAGGATTTAACCAGGCTGCTGTATTAACCAGATTATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGCCAA
AAAATAATCAATACCGCTTCACAAGCCAACCTTGATGGAGAGCAACGAAGGAAAAATTTACGTCATGCTTTTTATGTATC
ACCTGTAACTTATGAACACGTCATGATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACAT
TAAAAAATGCCGGAGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGACTGTAACTAAAAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

98.291

100

0.983
  comFC Legionella pneumophila strain ERS1305867

97.959

83.761

0.821