Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OXA86_RS03340 Genome accession   NZ_CP113439
Coordinates   700467..700916 (-) Length   149 a.a.
NCBI ID   WP_027220488.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 695467..705916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA86_RS03320 (OXA86_03320) - 695741..696133 (-) 393 WP_011214843.1 hypothetical protein -
  OXA86_RS03325 (OXA86_03325) - 696270..696647 (+) 378 WP_027220485.1 hypothetical protein -
  OXA86_RS03330 (OXA86_03330) - 696849..698156 (+) 1308 WP_027220486.1 tetratricopeptide repeat protein -
  OXA86_RS03335 (OXA86_03335) comEC 698182..700389 (-) 2208 WP_027220487.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OXA86_RS03340 (OXA86_03340) pilE 700467..700916 (-) 450 WP_027220488.1 type IV pilin protein Machinery gene
  OXA86_RS03345 (OXA86_03345) - 700928..704437 (-) 3510 WP_027220489.1 pilus assembly protein -
  OXA86_RS03350 (OXA86_03350) - 704450..704962 (-) 513 WP_027220490.1 pilus assembly protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16347.65 Da        Isoelectric Point: 8.1177

>NTDB_id=762224 OXA86_RS03340 WP_027220488.1 700467..700916(-) (pilE) [Legionella pneumophila strain PATHC002]
MLSHVHFMKNRRMKQSAFTLVEVLISMVIMGILVSIAYPSYLQYIQKSRRADAHATLTQDQIILERCYSQNFSYAAACGA
LPAFPQTTPNGYYTINISNLTATTYTLTATPVGTQAKDTECASLSINQANVKTAVDSSANAQPECWNPG

Nucleotide


Download         Length: 450 bp        

>NTDB_id=762224 OXA86_RS03340 WP_027220488.1 700467..700916(-) (pilE) [Legionella pneumophila strain PATHC002]
ATGCTCAGTCATGTACATTTTATGAAGAATCGCCGTATGAAACAATCCGCGTTTACCCTGGTTGAAGTTCTGATCAGCAT
GGTCATTATGGGCATTCTGGTTTCAATTGCCTATCCATCCTATTTACAATATATCCAAAAATCCCGTCGTGCCGATGCTC
ACGCCACATTGACACAAGATCAAATTATTTTAGAACGCTGTTATTCACAGAATTTTTCTTATGCTGCAGCGTGTGGCGCC
CTACCAGCATTTCCTCAAACAACGCCGAACGGGTACTATACTATCAATATTTCAAACCTGACGGCCACAACGTATACCTT
AACCGCAACCCCTGTTGGAACTCAAGCCAAAGATACCGAGTGTGCCAGCCTGTCAATTAATCAGGCCAATGTAAAAACAG
CAGTAGATTCCTCCGCTAATGCGCAACCAGAATGCTGGAATCCCGGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-38)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(39-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

98.658

100

0.987
  pilE Legionella pneumophila strain ERS1305867

98.658

100

0.987