Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LDM87_RS02865 Genome accession   NZ_AP024964
Coordinates   594943..595494 (+) Length   183 a.a.
NCBI ID   WP_096481916.1    Uniprot ID   -
Organism   Helicobacter pylori strain #6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 589943..600494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM87_RS02850 (OHP006_05580) cysS 590121..591518 (-) 1398 WP_223893759.1 cysteine--tRNA ligase -
  LDM87_RS02855 (OHP006_05590) murJ 591519..592979 (-) 1461 WP_223887274.1 murein biosynthesis integral membrane protein MurJ -
  LDM87_RS02860 (OHP006_05600) - 593072..594916 (+) 1845 WP_223893761.1 FapA family protein -
  LDM87_RS02865 (OHP006_05610) ruvA 594943..595494 (+) 552 WP_096481916.1 Holliday junction branch migration protein RuvA Machinery gene
  LDM87_RS02870 (OHP006_05630) - 595546..597967 (+) 2422 Protein_558 DUF3519 domain-containing protein -
  LDM87_RS02875 (OHP006_05640) - 597982..598347 (+) 366 WP_223893777.1 hypothetical protein -
  LDM87_RS02880 (OHP006_05650) - 598379..599515 (-) 1137 WP_000462009.1 TrkA family potassium uptake protein -
  LDM87_RS02885 (OHP006_05660) rpmB 599665..599853 (-) 189 WP_001119000.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20178.82 Da        Isoelectric Point: 9.4311

>NTDB_id=76215 LDM87_RS02865 WP_096481916.1 594943..595494(+) (ruvA) [Helicobacter pylori strain #6]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETGPMRNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=76215 LDM87_RS02865 WP_096481916.1 594943..595494(+) (ruvA) [Helicobacter pylori strain #6]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTAATTAAAG
AAGATGCACATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTGGCCCTATGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.989

100

0.94
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361

Multiple sequence alignment