Detailed information NTG0762111

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OXA88_RS06995
• Genome accession: NZ_CP113436
• Coordinates: 1576993..1577856 (+)
• Length: 287 a.a.
• NCBI ID: WP_015444491.1
• Uniprot ID: I7HPT6
• Organism: Legionella pneumophila strain PATHC021
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1571993..1582856

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OXA88_RS06975 (OXA88_06975)	-	1572486..1572812 (-)	327	WP_010947249.1	DUF1820 family protein	-
OXA88_RS06980 (OXA88_06980)	-	1572995..1573738 (-)	744	WP_010947250.1	methyltransferase domain-containing protein	-
OXA88_RS06985 (OXA88_06985)	pilB	1573997..1575721 (+)	1725	WP_010947251.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OXA88_RS06990 (OXA88_06990)	pilC	1575727..1576947 (+)	1221	WP_010947252.1	type II secretion system F family protein	Machinery gene
OXA88_RS06995 (OXA88_06995)	pilD	1576993..1577856 (+)	864	WP_015444491.1	prepilin peptidase	Machinery gene
OXA88_RS07000 (OXA88_07000)	-	1577870..1579075 (-)	1206	WP_015444490.1	cyclic nucleotide-binding domain-containing protein	-
OXA88_RS07005 (OXA88_07005)	-	1579183..1579776 (-)	594	WP_010947255.1	hypothetical protein	-
OXA88_RS07010 (OXA88_07010)	-	1579792..1580247 (-)	456	WP_010947256.1	hypothetical protein	-
OXA88_RS07015 (OXA88_07015)	-	1580381..1581196 (+)	816	WP_010947257.1	pyruvate, water dikinase regulatory protein	-
OXA88_RS07020 (OXA88_07020)	-	1581321..1582769 (-)	1449	WP_015444489.1	bifunctional 2-methylcitrate dehydratase/aconitate hydratase	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 32769.36 Da
• Isoelectric Point: 7.8442

>NTDB_id=762111 OXA88_RS06995 WP_015444491.1 1576993..1577856(+) (pilD) [Legionella pneumophila strain PATHC021]
MINALIINYPWFMYLVVGLFSLAVGSLLNVIIYRLPIILQEEWKEQCCELFHLEQRKEKIKLNLFLPRSFCPHCKAMVKA
WQNIPLLSYILLRGRCYQCDSPISIRYPFVETLTTVLSLYASWHFGFTIQLLFALLAIWILISLVFIDLDHQLLPDSLTL
GLLWIGLIANTQNVFVSLDVAVLSCAGAYLALWLFINLFYLMTGKVGMGHGDFKLFAAFGAWLGWMYLPLILLISSITGA
IIGLIYLKINGKSRDTAIPFGPFLCISGLIAMFWGDSIINWYIGYWM

Nucleotide

• Length: 864 bp

>NTDB_id=762111 OXA88_RS06995 WP_015444491.1 1576993..1577856(+) (pilD) [Legionella pneumophila strain PATHC021]
ATGATAAATGCACTAATAATCAATTATCCATGGTTTATGTATTTAGTCGTTGGACTCTTTTCTCTAGCCGTTGGAAGTTT
GCTTAATGTGATAATCTATCGCTTACCAATTATTTTGCAGGAAGAGTGGAAAGAGCAATGCTGTGAGCTATTCCATCTTG
AACAGCGAAAAGAAAAAATAAAACTTAATTTATTTTTACCACGTTCTTTTTGTCCTCATTGTAAAGCGATGGTTAAAGCG
TGGCAGAATATTCCTCTGTTAAGCTATATTTTGTTAAGAGGACGCTGTTACCAATGTGATAGTCCAATTTCAATCCGCTA
CCCTTTTGTTGAGACGTTGACCACAGTTTTATCCTTATACGCCAGTTGGCATTTTGGGTTTACAATACAATTATTATTTG
CTTTATTAGCTATCTGGATATTAATATCACTTGTTTTTATTGATCTTGATCATCAATTACTCCCTGATAGCCTCACTTTA
GGGCTCTTATGGATTGGCCTTATTGCTAATACCCAGAATGTATTTGTTAGTCTTGACGTTGCTGTATTAAGCTGCGCTGG
CGCTTATTTAGCCTTATGGCTATTCATTAATCTGTTTTATCTGATGACAGGTAAAGTAGGTATGGGACATGGAGATTTCA
AATTATTTGCAGCATTTGGTGCCTGGCTTGGATGGATGTATTTACCATTAATTCTACTAATATCTTCAATAACGGGGGCT
ATCATTGGTTTGATTTATTTAAAGATAAATGGTAAATCAAGAGATACTGCAATACCATTTGGCCCTTTTCTTTGCATTTC
TGGATTAATAGCTATGTTTTGGGGAGACTCAATCATCAATTGGTATATAGGTTATTGGATGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

3D structure

• AlphaFold DB: I7HPT6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.11	97.909	0.481
pilD	Acinetobacter nosocomialis M2	47.985	95.122	0.456
pilD	Acinetobacter baumannii D1279779	47.273	95.819	0.453
pilD	Vibrio campbellii strain DS40M4	45.324	96.864	0.439
pilD	Neisseria gonorrhoeae MS11	42.806	96.864	0.415