Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   QL280_RS02305 Genome accession   NZ_CP125291
Coordinates   461193..462242 (+) Length   349 a.a.
NCBI ID   WP_000653768.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 105_Kz     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 456193..467242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL280_RS02275 (QL280_02275) - 457439..457843 (+) 405 WP_000343113.1 hypothetical protein -
  QL280_RS02280 (QL280_02280) dnaJ 458187..459323 (+) 1137 WP_001066301.1 molecular chaperone DnaJ -
  QL280_RS02285 (QL280_02285) - 459352..459528 (-) 177 WP_001810526.1 hypothetical protein -
  QL280_RS02290 (QL280_02290) - 459690..459977 (-) 288 WP_000777760.1 hypothetical protein -
  QL280_RS02295 (QL280_02295) - 459987..460397 (-) 411 WP_001278301.1 HIT family protein -
  QL280_RS02300 (QL280_02300) pptA 460465..461196 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  QL280_RS02305 (QL280_02305) pptB 461193..462242 (+) 1050 WP_000653768.1 ABC transporter permease Regulator
  QL280_RS02310 (QL280_02310) - 462410..462739 (-) 330 WP_000132583.1 hypothetical protein -
  QL280_RS02315 (QL280_02315) - 463016..463354 (+) 339 WP_000682136.1 LytTR family DNA-binding domain-containing protein -
  QL280_RS02320 (QL280_02320) comE/blpR 463359..464096 (+) 738 WP_001219137.1 LytTR family DNA-binding domain-containing protein Regulator
  QL280_RS02325 (QL280_02325) - 464110..465450 (+) 1341 WP_001099894.1 sensor histidine kinase -
  QL280_RS02330 (QL280_02330) blpC 465494..465649 (-) 156 WP_000358812.1 quorum-sensing system pheromone BlpC -
  QL280_RS02335 (QL280_02335) - 465706..467067 (-) 1362 WP_001069065.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=762104 QL280_RS02305 WP_000653768.1 461193..462242(+) (pptB) [Streptococcus pneumoniae strain 105_Kz]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYLISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVEVVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=762104 QL280_RS02305 WP_000653768.1 461193..462242(+) (pptB) [Streptococcus pneumoniae strain 105_Kz]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCCTTGTTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATCTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGTGTCAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAAGTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467