Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OU419_RS19495 Genome accession   NZ_CP113432
Coordinates   4201053..4201688 (-) Length   211 a.a.
NCBI ID   WP_254475066.1    Uniprot ID   -
Organism   Pseudomonas triclosanedens strain ZM23     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4196053..4206688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU419_RS19465 (OU419_19465) murB 4197126..4198145 (-) 1020 WP_254475076.1 UDP-N-acetylmuramate dehydrogenase -
  OU419_RS19470 (OU419_19470) - 4198142..4198606 (-) 465 WP_254475074.1 low molecular weight protein-tyrosine-phosphatase -
  OU419_RS19475 (OU419_19475) kdsB 4198606..4199373 (-) 768 WP_254475072.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OU419_RS19480 (OU419_19480) - 4199378..4199563 (-) 186 WP_009621404.1 Trm112 family protein -
  OU419_RS19485 (OU419_19485) lpxK 4199615..4200613 (-) 999 WP_254475070.1 tetraacyldisaccharide 4'-kinase -
  OU419_RS19490 (OU419_19490) - 4200613..4201056 (-) 444 WP_254475068.1 biopolymer transporter ExbD -
  OU419_RS19495 (OU419_19495) exbB 4201053..4201688 (-) 636 WP_254475066.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OU419_RS19500 (OU419_19500) comA 4201761..4203971 (-) 2211 WP_254475064.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OU419_RS19505 (OU419_19505) - 4204122..4204652 (+) 531 WP_254475062.1 DUF2062 domain-containing protein -
  OU419_RS19510 (OU419_19510) - 4204731..4205978 (-) 1248 WP_254475060.1 lipoprotein-releasing ABC transporter permease subunit -
  OU419_RS19515 (OU419_19515) lolD 4205990..4206688 (-) 699 WP_254475056.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22982.28 Da        Isoelectric Point: 8.0527

>NTDB_id=761957 OU419_RS19495 WP_254475066.1 4201053..4201688(-) (exbB) [Pseudomonas triclosanedens strain ZM23]
MWELVKAGGWMMLPILLSSVAAMAIIAERLWTLRKSRVAPPQLLGQVWKQIKDKKMNSQALKDLRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPMLAGGISKALITTAS
GLVVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDFVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=761957 OU419_RS19495 WP_254475066.1 4201053..4201688(-) (exbB) [Pseudomonas triclosanedens strain ZM23]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCTTGCTGAGCTCCGTCGCTGCCATGGCGATCATCGC
CGAACGTCTGTGGACTTTGCGCAAGAGCCGCGTGGCTCCGCCGCAACTGCTCGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGATGAACAGCCAGGCGCTCAAGGACCTGCGTGCATCGTCCCCTCTGGGTGAAATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCTTCCCGGGTCATCCATGAGCTCGAACGCTACCT
CAACGCGCTGGGCACCATCGCCGCGATGGCGCCGCTGCTCGGCCTGCTGGGTACGGTGTTCGGAATGATCCAGATTTTCA
GTGCCTTCATGGGCGATGGCATGGCCAATGCCCCGATGCTCGCTGGCGGTATCTCCAAGGCTCTGATCACCACCGCATCT
GGCCTGGTCGTCGCTATTCCCGCCGTATTCTTCCACCGCTATCTGCTGCGTCGCGTCGACGAGCTGGTGATCGCTATGGA
GCAGGAGGCGATCAAGCTGGTTGAAGTGGTCCAGGGCGACCGCGAAGTCGACTTCGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.517

100

0.815