Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QMA14_RS09440 Genome accession   NZ_CP125087
Coordinates   1942438..1943037 (-) Length   199 a.a.
NCBI ID   WP_005695777.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain EL1     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1937438..1948037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA14_RS09405 (QMA14_09405) rpsO 1937569..1937838 (-) 270 WP_005628925.1 30S ribosomal protein S15 -
  QMA14_RS09410 (QMA14_09410) - 1937971..1938174 (-) 204 WP_353885163.1 substrate-binding domain-containing protein -
  QMA14_RS09415 (QMA14_09415) - 1938101..1938688 (-) 588 WP_255308511.1 substrate-binding domain-containing protein -
  QMA14_RS09420 (QMA14_09420) - 1938681..1939457 (-) 777 WP_081279066.1 ABC transporter ATP-binding protein -
  QMA14_RS09425 (QMA14_09425) - 1939450..1940463 (-) 1014 WP_065243149.1 iron ABC transporter permease -
  QMA14_RS09430 (QMA14_09430) - 1940453..1941493 (-) 1041 WP_284173856.1 ABC transporter substrate-binding protein -
  QMA14_RS09435 (QMA14_09435) modD 1941583..1942428 (-) 846 WP_065243147.1 ModD protein -
  QMA14_RS09440 (QMA14_09440) comA 1942438..1943037 (-) 600 WP_005695777.1 ABC transporter ATP-binding protein Regulator
  QMA14_RS09445 (QMA14_09445) - 1943039..1943836 (-) 798 WP_049376327.1 ABC transporter permease -
  QMA14_RS09450 (QMA14_09450) modA 1943811..1944545 (-) 735 WP_049376328.1 molybdate ABC transporter substrate-binding protein -
  QMA14_RS09455 (QMA14_09455) - 1944635..1945384 (-) 750 WP_049376329.1 ABC transporter ATP-binding protein -
  QMA14_RS09460 (QMA14_09460) - 1945381..1946394 (-) 1014 WP_049376330.1 iron ABC transporter permease -
  QMA14_RS09465 (QMA14_09465) - 1946397..1947395 (-) 999 WP_284173857.1 iron ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22409.65 Da        Isoelectric Point: 7.9406

>NTDB_id=761825 QMA14_RS09440 WP_005695777.1 1942438..1943037(-) (comA) [Haemophilus parainfluenzae strain EL1]
MLQIQHLQVGILKDISLTVANGESVAIVGQSGSGKTTLLNAIAGYSDYQGSIAFNQCPWDNLASWERRCRYLNQRLYLFP
HKTVSGNLSLAKPKSTRQEQLDLLAQLNIDALIDRYPHQLSGGEQQRAALARALINPPDVMLLDEPFSSLDWQTRQQIWQ
NVKSLLKAFNLTTLLVTHEPKEADFLADRQIHLHLGRLI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=761825 QMA14_RS09440 WP_005695777.1 1942438..1943037(-) (comA) [Haemophilus parainfluenzae strain EL1]
ATGTTACAAATTCAACATTTACAGGTTGGTATTTTAAAGGATATTAGCCTAACGGTTGCAAATGGTGAATCGGTGGCGAT
TGTTGGACAATCGGGAAGCGGAAAAACCACGCTTCTCAATGCCATTGCCGGTTATTCGGATTATCAGGGGAGTATTGCAT
TTAACCAATGTCCTTGGGATAACCTTGCCTCTTGGGAAAGACGTTGTCGCTATTTAAATCAACGTTTGTACCTTTTTCCC
CATAAAACCGTAAGTGGAAACTTAAGTTTAGCGAAACCGAAAAGCACAAGACAGGAGCAACTTGATTTATTGGCACAGTT
GAACATTGATGCGTTGATCGATCGTTATCCGCATCAATTATCGGGCGGCGAGCAACAGCGCGCAGCATTGGCACGGGCGC
TAATCAATCCACCGGATGTGATGCTATTAGATGAGCCATTTTCATCATTGGATTGGCAAACCCGTCAACAGATTTGGCAA
AACGTAAAAAGCTTGCTCAAAGCCTTCAATCTCACCACATTATTGGTGACCCACGAGCCTAAAGAAGCAGATTTTCTAGC
GGATAGACAAATTCATTTACATTTAGGGCGATTAATTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(12-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus pneumoniae TIGR4

33.184

100

0.372
  comA Streptococcus pneumoniae Rx1

33.184

100

0.372
  comA Streptococcus pneumoniae D39

33.184

100

0.372
  comA Streptococcus pneumoniae R6

33.184

100

0.372
  comA Streptococcus mitis SK321

32.287

100

0.362