Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   OU421_RS09930 Genome accession   NZ_CP113361
Coordinates   2016662..2017672 (-) Length   336 a.a.
NCBI ID   WP_268185942.1    Uniprot ID   A0A9X9S2T0
Organism   Methanogenium organophilum strain DSM 3596     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2011662..2022672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU421_RS09900 (OU421_09900) - 2011764..2012549 (+) 786 WP_268187902.1 CBS domain-containing protein -
  OU421_RS09905 (OU421_09905) - 2012546..2013727 (-) 1182 WP_268185937.1 NDP-sugar synthase -
  OU421_RS09910 (OU421_09910) - 2013829..2014311 (+) 483 WP_268185938.1 YkgJ family cysteine cluster protein -
  OU421_RS09915 (OU421_09915) - 2014304..2014570 (+) 267 WP_268185939.1 hypothetical protein -
  OU421_RS09920 (OU421_09920) - 2014553..2016049 (-) 1497 WP_268185940.1 cobyric acid synthase -
  OU421_RS09925 (OU421_09925) yciH 2016205..2016510 (+) 306 WP_268185941.1 stress response translation initiation inhibitor YciH -
  OU421_RS09930 (OU421_09930) epdK 2016662..2017672 (-) 1011 WP_268185942.1 type II secretion system F family protein Machinery gene
  OU421_RS09935 (OU421_09935) epdJ 2017674..2018552 (-) 879 WP_326493494.1 type II secretion system F family protein Machinery gene
  OU421_RS09940 (OU421_09940) - 2018590..2021568 (-) 2979 WP_326493495.1 ATPase, T2SS/T4P/T4SS family -
  OU421_RS09945 (OU421_09945) - 2021579..2022190 (-) 612 WP_268185944.1 hypothetical protein -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37185.32 Da        Isoelectric Point: 5.0501

>NTDB_id=761749 OU421_RS09930 WP_268185942.1 2016662..2017672(-) (epdK) [Methanogenium organophilum strain DSM 3596]
MKIFDTKKPEDNTRENTQEIQKDEDIIARVEERHRSTEGMGKFLHHPVQMLTEKPINILILTIPIAIIVFMIGLIIQVSK
LGVFLALTTTGIDDYFLLAVLIATIPLAILDLKDSTRMRNLNITLPNFFRDVAGMNESGMTLPNAIHVVADGEYGTLTQY
IKKLDAEMSWNIPFVDAIYQFGERIGTPLAQRSVDLIAKASRAGGDVSEVLRAAANDSYEFVNLETERRNNMLIYVIIVL
VSYLVFLFVIAVMTGTFLDTMAEAGEAVTQSGGSGTGFGAAIDMEFYRRLFLHASVIQGFFSGLVAGQMGEGRAVAGLKY
SVVMVIIGWVAFRLFI

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=761749 OU421_RS09930 WP_268185942.1 2016662..2017672(-) (epdK) [Methanogenium organophilum strain DSM 3596]
ATGAAAATATTTGATACAAAAAAACCGGAAGACAATACACGCGAAAATACACAAGAAATCCAAAAGGATGAAGATATAAT
TGCACGGGTGGAAGAGCGGCACCGTTCAACGGAGGGCATGGGAAAATTCCTGCATCATCCGGTTCAGATGCTTACCGAAA
AACCAATAAATATTCTGATTCTCACAATCCCAATCGCAATCATTGTATTCATGATCGGGTTGATAATCCAGGTGAGTAAA
TTAGGAGTTTTCCTTGCACTAACGACAACTGGTATTGATGATTACTTCCTTCTGGCAGTGCTGATTGCAACAATTCCCCT
TGCCATACTGGATCTAAAAGACTCAACAAGAATGAGAAATCTCAATATTACGCTGCCGAATTTTTTCCGTGATGTGGCAG
GTATGAATGAAAGCGGAATGACACTCCCCAATGCGATTCATGTTGTTGCAGATGGTGAATATGGAACCCTCACCCAGTAT
ATCAAAAAACTGGACGCAGAGATGTCATGGAATATTCCCTTCGTCGATGCAATCTACCAGTTTGGTGAGCGGATAGGCAC
ACCACTTGCGCAGAGGAGTGTTGATCTCATCGCAAAAGCGAGCAGGGCAGGTGGGGATGTGAGTGAAGTCCTGCGTGCTG
CCGCAAATGACAGTTATGAGTTTGTCAACCTTGAAACAGAGCGACGCAATAATATGCTCATTTATGTGATTATCGTACTT
GTTTCCTATCTTGTCTTCCTCTTCGTGATTGCTGTCATGACCGGAACATTTCTGGATACAATGGCAGAGGCAGGCGAGGC
AGTAACACAGTCCGGAGGCAGTGGAACCGGGTTTGGAGCGGCAATTGACATGGAATTTTACCGACGTCTTTTCCTCCATG
CATCCGTCATTCAGGGCTTTTTTTCAGGTCTTGTAGCGGGACAGATGGGTGAGGGACGGGCAGTTGCCGGGCTGAAATAC
TCTGTTGTCATGGTAATCATAGGATGGGTTGCATTCAGACTCTTCATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(128-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanoculleus thermophilus strain DSM 2373

58.521

92.56

0.542