Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   OU421_RS09935 Genome accession   NZ_CP113361
Coordinates   2017674..2018552 (-) Length   292 a.a.
NCBI ID   WP_326493494.1    Uniprot ID   -
Organism   Methanogenium organophilum strain DSM 3596     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2012674..2023552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU421_RS09910 (OU421_09910) - 2013829..2014311 (+) 483 WP_268185938.1 YkgJ family cysteine cluster protein -
  OU421_RS09915 (OU421_09915) - 2014304..2014570 (+) 267 WP_268185939.1 hypothetical protein -
  OU421_RS09920 (OU421_09920) - 2014553..2016049 (-) 1497 WP_268185940.1 cobyric acid synthase -
  OU421_RS09925 (OU421_09925) yciH 2016205..2016510 (+) 306 WP_268185941.1 stress response translation initiation inhibitor YciH -
  OU421_RS09930 (OU421_09930) epdK 2016662..2017672 (-) 1011 WP_268185942.1 type II secretion system F family protein Machinery gene
  OU421_RS09935 (OU421_09935) epdJ 2017674..2018552 (-) 879 WP_326493494.1 type II secretion system F family protein Machinery gene
  OU421_RS09940 (OU421_09940) - 2018590..2021568 (-) 2979 WP_326493495.1 ATPase, T2SS/T4P/T4SS family -
  OU421_RS09945 (OU421_09945) - 2021579..2022190 (-) 612 WP_268185944.1 hypothetical protein -
  OU421_RS09950 (OU421_09950) - 2022228..2022881 (-) 654 WP_268185945.1 roadblock/LC7 domain-containing protein -
  OU421_RS09955 (OU421_09955) - 2022887..2023234 (-) 348 WP_326493496.1 roadblock/LC7 domain-containing protein -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32422.13 Da        Isoelectric Point: 5.4052

>NTDB_id=761750 OU421_RS09935 WP_326493494.1 2017674..2018552(-) (epdJ) [Methanogenium organophilum strain DSM 3596]
MKAKRDDFLFLRNDMMRARMTVPFEAYMSTAYITSAIVGLIFGLLIGFVTYIFRLPDLIVYYGSLPDFIMALNPFKIVIG
AAIVMAVCLLVFGGITYAVFLIYPGIMAGERKRNIDATLPYAINYITAMSTAGITPAEVFRLLGQSKIYGESAVEARYIS
REIDIFGKDLLDALRIAGQYTPSGRMRDFLQGATASISSGSNLTEYFRTKSEQYTRENRLEQKTFLETLGLISESYVTAL
VAGTLFLIILQSIMSTISGETDPLFLYAVIYAIIPLGSIMFVILISSMTPEV

Nucleotide


Download         Length: 879 bp        

>NTDB_id=761750 OU421_RS09935 WP_326493494.1 2017674..2018552(-) (epdJ) [Methanogenium organophilum strain DSM 3596]
ATGAAAGCAAAAAGAGATGACTTTCTCTTTTTACGTAATGACATGATGCGCGCACGGATGACCGTGCCGTTTGAAGCATA
TATGTCAACGGCTTATATCACGTCAGCAATTGTCGGACTGATATTCGGACTTCTGATTGGTTTTGTGACATACATATTCC
GCCTTCCGGACTTAATCGTCTATTATGGAAGTCTGCCCGATTTCATCATGGCCCTCAACCCGTTTAAAATTGTAATCGGT
GCGGCAATCGTTATGGCTGTCTGCCTCCTTGTATTCGGAGGAATTACATATGCGGTATTTCTCATATACCCTGGAATCAT
GGCAGGAGAGAGAAAGAGAAACATCGATGCAACGCTTCCGTATGCAATTAACTACATTACTGCGATGTCAACAGCAGGAA
TCACCCCGGCAGAAGTATTCCGACTGCTCGGACAGAGTAAGATCTATGGAGAAAGTGCTGTCGAAGCGCGATATATATCC
CGTGAAATTGATATTTTTGGAAAAGACCTTCTGGATGCCCTGAGAATTGCCGGTCAGTATACTCCCAGTGGCAGAATGCG
TGACTTTCTCCAGGGGGCAACGGCAAGTATTTCATCAGGAAGTAATCTGACAGAATATTTCCGTACCAAGTCAGAACAAT
ATACCCGGGAAAACCGGCTGGAACAGAAGACATTCCTTGAAACTCTTGGATTAATCTCGGAGTCGTATGTAACAGCACTG
GTTGCGGGAACACTGTTTCTTATCATTCTTCAGTCAATCATGTCAACAATCAGCGGTGAAACAGACCCCCTGTTTCTGTA
TGCGGTGATTTATGCAATAATTCCACTGGGCAGCATCATGTTTGTGATTCTTATCAGCTCAATGACTCCGGAGGTGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(123-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanoculleus thermophilus strain DSM 2373

70.548

100

0.705