Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   G6L16_RS12950 Genome accession   NZ_CP124963
Coordinates   2655975..2656580 (-) Length   201 a.a.
NCBI ID   WP_174001178.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain AF1/95     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2650975..2661580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L16_RS12935 (G6L16_012935) rimP 2652010..2652606 (-) 597 WP_003514299.1 ribosome maturation factor RimP -
  G6L16_RS12940 (G6L16_012940) - 2652894..2654522 (+) 1629 WP_097101080.1 MFS transporter -
  G6L16_RS12945 (G6L16_012945) - 2654613..2655851 (-) 1239 WP_410171784.1 lytic murein transglycosylase -
  G6L16_RS12950 (G6L16_012950) recR 2655975..2656580 (-) 606 WP_174001178.1 recombination mediator RecR Machinery gene
  G6L16_RS12955 (G6L16_012955) - 2656618..2657253 (+) 636 WP_174001179.1 MOSC domain-containing protein -
  G6L16_RS12960 (G6L16_012960) - 2657267..2657590 (-) 324 WP_003514318.1 YbaB/EbfC family nucleoid-associated protein -
  G6L16_RS12965 (G6L16_012965) - 2657618..2659495 (-) 1878 WP_174001180.1 DNA polymerase III subunit gamma/tau -
  G6L16_RS12975 (G6L16_012975) - 2659820..2660248 (+) 429 WP_161986907.1 HIT domain-containing protein -
  G6L16_RS12980 (G6L16_012980) nudC 2660248..2661210 (+) 963 WP_154961419.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21381.74 Da        Isoelectric Point: 6.3321

>NTDB_id=761734 G6L16_RS12950 WP_174001178.1 2655975..2656580(-) (recR) [Agrobacterium tumefaciens strain AF1/95]
MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKKEQLLGPLGHAMGEAYDKVKICSCCGNVDTIDPCTVCADDRR
DQSVIIVVEDVSDLWALERAGAMNTAYHVLGGTLSPLDGVGPEDLNIKGLIDRVTAGGIRELIIAVNATVEGQATAHYIT
DRLADLGIKITRLAHGVPVGGELDYLDEGTLTAALRARTTI

Nucleotide


Download         Length: 606 bp        

>NTDB_id=761734 G6L16_RS12950 WP_174001178.1 2655975..2656580(-) (recR) [Agrobacterium tumefaciens strain AF1/95]
ATGGCAAAACGAGTCACCGGTCCCGAAATCGAAAAACTGATCCAGCTGCTTGCAAAAGTGCCGGGGCTTGGGCCCCGCTC
GGCGCGGCGGGCGGCGCTGCATCTCATCAAAAAGAAGGAACAGCTTCTTGGACCGCTGGGCCACGCGATGGGTGAAGCCT
ATGACAAGGTGAAGATCTGCTCGTGCTGCGGCAATGTCGATACCATCGATCCCTGCACGGTCTGCGCCGATGATAGACGT
GACCAGTCGGTCATCATCGTGGTGGAAGACGTGTCGGATCTGTGGGCGCTGGAGCGAGCAGGCGCCATGAATACCGCCTA
TCATGTGCTTGGTGGCACGCTGTCGCCGCTCGATGGCGTCGGGCCGGAAGATCTGAACATCAAGGGACTGATCGATCGCG
TCACCGCCGGCGGTATTCGCGAGCTCATCATCGCCGTCAATGCGACGGTGGAGGGACAGGCAACAGCCCATTACATCACC
GACCGCCTGGCCGATCTCGGCATCAAGATCACCCGGCTTGCGCATGGCGTGCCTGTTGGCGGCGAGCTGGACTATCTCGA
CGAGGGCACATTGACGGCGGCGCTGCGCGCACGCACAACGATCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(45-81)

Toprim domain (Toprim_4)

(83-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.907

96.517

0.453
  recR Bacillus subtilis subsp. subtilis str. 168

45.833

95.522

0.438
  recR Streptococcus pneumoniae R6

39.062

95.522

0.373