Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QIY60_RS14420 Genome accession   NZ_CP124863
Coordinates   3229757..3230356 (+) Length   199 a.a.
NCBI ID   WP_283142798.1    Uniprot ID   -
Organism   Streptomyces sp. BPTC-684     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3224757..3235356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIY60_RS14400 (QIY60_14400) - 3226442..3227092 (+) 651 WP_283142795.1 hypothetical protein -
  QIY60_RS14405 (QIY60_14405) - 3227192..3228046 (+) 855 WP_283145925.1 class I SAM-dependent methyltransferase -
  QIY60_RS14410 (QIY60_14410) - 3228322..3229047 (-) 726 WP_283142796.1 SLATT domain-containing protein -
  QIY60_RS14415 (QIY60_14415) - 3229335..3229670 (+) 336 WP_283142797.1 YbaB/EbfC family nucleoid-associated protein -
  QIY60_RS14420 (QIY60_14420) recR 3229757..3230356 (+) 600 WP_283142798.1 recombination mediator RecR Machinery gene
  QIY60_RS14425 (QIY60_14425) - 3230349..3231008 (+) 660 WP_283142799.1 DUF5063 domain-containing protein -
  QIY60_RS14430 (QIY60_14430) - 3231476..3232240 (+) 765 WP_283142800.1 hypothetical protein -
  QIY60_RS14435 (QIY60_14435) - 3232279..3232554 (+) 276 WP_283142801.1 hypothetical protein -
  QIY60_RS14440 (QIY60_14440) - 3232551..3232940 (+) 390 WP_283142802.1 twitching motility protein PilT -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21896.21 Da        Isoelectric Point: 5.0142

>NTDB_id=761674 QIY60_RS14420 WP_283142798.1 3229757..3230356(+) (recR) [Streptomyces sp. BPTC-684]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPADVRRLAHALLEVKDKVRFCAVCGNVAQEERCNICRDPRRDEAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=761674 QIY60_RS14420 WP_283142798.1 3229757..3230356(+) (recR) [Streptomyces sp. BPTC-684]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCCGCCGACGTGCGCCGGCTCGCGCACGCCCTGCTCGAAGTGAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGCAACGTGGCGCAGGAGGAGCGGTGCAACATCTGCCGCGACCCGCGCCGCGACGAGGCCGTC
ATCTGCGTCGTGGAGGAGCCGAAGGACGTCGTGGCGATCGAGCGGACCCGCGAGTTCCGCGGCCGCTACCACGTGCTCGG
CGGCGCCATCAGCCCCATCGAGGGGGTCGGCCCGGACGATCTGCGCATCCGCGAGCTGCTCGCCCGGCTCGCCGACGGCA
CGGTCACCGAGCTGATCCTGGCCACCGACCCGAACCTGGAGGGCGAGGCGACAGCGACGTACCTCGCCCGCATGATCAAG
CCGATGGGCCTGCGGGTCACCCGGCTGGCCAGCGGACTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457