Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QLF90_RS06860 Genome accession   NZ_CP124854
Coordinates   1399663..1400349 (+) Length   228 a.a.
NCBI ID   WP_001794049.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ED86     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1394663..1405349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLF90_RS06825 (QLF90_06830) yqeH 1395190..1396290 (+) 1101 WP_001280134.1 ribosome biogenesis GTPase YqeH -
  QLF90_RS06830 (QLF90_06835) aroE 1396304..1397110 (+) 807 WP_000666750.1 shikimate dehydrogenase -
  QLF90_RS06835 (QLF90_06840) yhbY 1397114..1397404 (+) 291 WP_000955232.1 ribosome assembly RNA-binding protein YhbY -
  QLF90_RS06840 (QLF90_06845) nadD 1397407..1397976 (+) 570 WP_000822938.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  QLF90_RS06845 (QLF90_06850) yqeK 1397966..1398550 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QLF90_RS06850 (QLF90_06855) rsfS 1398551..1398904 (+) 354 WP_001088020.1 ribosome silencing factor -
  QLF90_RS06855 (QLF90_06860) - 1398907..1399623 (+) 717 WP_000084835.1 class I SAM-dependent DNA methyltransferase -
  QLF90_RS06860 (QLF90_06865) comEA 1399663..1400349 (+) 687 WP_001794049.1 ComEA family DNA-binding protein Machinery gene
  QLF90_RS06865 (QLF90_06870) - 1400441..1400902 (+) 462 WP_000439692.1 ComE operon protein 2 -
  QLF90_RS06870 (QLF90_06875) comEC 1400907..1403108 (+) 2202 WP_000967506.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QLF90_RS06875 (QLF90_06880) holA 1403165..1404139 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  QLF90_RS06880 (QLF90_06885) rpsT 1404184..1404435 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25766.38 Da        Isoelectric Point: 9.3383

>NTDB_id=761587 QLF90_RS06860 WP_001794049.1 1399663..1400349(+) (comEA) [Staphylococcus aureus strain ED86]
MVLLYQFLLRYKDFLAQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTVLKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLNSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=761587 QLF90_RS06860 WP_001794049.1 1399663..1400349(+) (comEA) [Staphylococcus aureus strain ED86]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAGCTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
TTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAATTCTTATTTCACGACATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

95.595

99.561

0.952
  comEA Staphylococcus aureus N315

95.595

99.561

0.952