Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   OTB22_RS08095 Genome accession   NZ_CP113267
Coordinates   1593371..1594102 (-) Length   243 a.a.
NCBI ID   WP_001866897.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BC2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1588371..1599102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTB22_RS08065 (OTB22_08070) blpC 1588918..1589046 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  OTB22_RS08070 (OTB22_08075) - 1589117..1590457 (-) 1341 WP_001017646.1 sensor histidine kinase -
  OTB22_RS08075 (OTB22_08080) comE/blpR 1590471..1591208 (-) 738 WP_219569151.1 response regulator transcription factor Regulator
  OTB22_RS08080 (OTB22_08085) - 1591213..1591551 (-) 339 WP_000682133.1 LytTR family DNA-binding domain-containing protein -
  OTB22_RS08085 (OTB22_08090) - 1591828..1592157 (+) 330 WP_000132572.1 hypothetical protein -
  OTB22_RS08090 (OTB22_08095) - 1592325..1593374 (-) 1050 WP_000653771.1 ABC transporter permease -
  OTB22_RS08095 (OTB22_08100) pptA 1593371..1594102 (-) 732 WP_001866897.1 ABC transporter ATP-binding protein Regulator
  OTB22_RS08100 (OTB22_08105) - 1594170..1594580 (+) 411 WP_001278301.1 HIT family protein -
  OTB22_RS08105 (OTB22_08110) - 1594590..1594877 (+) 288 WP_268217887.1 hypothetical protein -
  OTB22_RS08110 (OTB22_08115) dnaJ 1595244..1596380 (-) 1137 WP_268217888.1 molecular chaperone DnaJ -
  OTB22_RS08115 (OTB22_08120) - 1596782..1597138 (-) 357 WP_000114433.1 hypothetical protein -
  OTB22_RS08120 (OTB22_08125) dnaK 1597140..1598963 (-) 1824 WP_000034673.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27030.52 Da        Isoelectric Point: 4.7737

>NTDB_id=761489 OTB22_RS08095 WP_001866897.1 1593371..1594102(-) (pptA) [Streptococcus pneumoniae strain BC2]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTMQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=761489 OTB22_RS08095 WP_001866897.1 1593371..1594102(-) (pptA) [Streptococcus pneumoniae strain BC2]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTATGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTAGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712